Gene HMPREF0424_0799 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0799 
Symbol 
ID8709925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp904208 
End bp905044 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content39% 
IMG OID646482900 
Producthypothetical protein 
Protein accessionYP_003374017 
Protein GI283783263 
COG category[S] Function unknown 
COG ID[COG3879] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTCAA TGTTTTCTCA TTCTCCACAA GGTGATGATA TTCTTCATAA AATGCGTCGT 
CAAAAAGCGC ATGATCGTGA AAGTGATGAA ACTCAAACTG GATCTTTCCC AGCAGTTCAT
CGTAAAGTAA AATCTTCACT AAGTGGTCAT GTGACGCGGG CGCGTATATT TACGGGCTTT
TTAATGATGT TGCTCTGCGC TTTATTAGGT TTTGCGTACA TGATTCAAGT TAATCGTAGT
AACTCACTTT TGTATGAAAC AATGAGTGAA GAGGAGTTGA CGCGTCTTAT TACAGAAACT
CATTCTCAAA TTCAGAGTTT GGAAAGCCGA AAAAGTGAAT TAACAGGTCA GCTTAATTCG
TTGCGTGAAG CAGTAGATAA ACAAGATGAA GCTCGTCGCA TTGCTCAGCA GAATGCTCAA
GCAAATGGTC TTATTTCTGG ACGTCTGCCG GCAGTAGGTA AAGGTATTGT AGTTCACATT
ACCGCAGGTG AAAAAGAGAA TATTGATGCC GCTACGATGT TTCAGCTAAT AGAGGAATTG
CGAAATGCTG GCGTAGAAGT TATGTCTATT AACGGTGTGA GAATAGTTAC TTCAAGCTAT
ATTTCACAAA CTAAGCATGG TCTTATATGT GACAATATTA TGATTGATCC TCCTTATATT
GTGAAAGCAA TTGGTGACCC TCAGAATTTG CAAAATGCTG TTAATATTGC AGGCGGTGTT
GGGTCGCGTT TAAAAATTAA ATTTGGTTCT TCTGTAATGG TTTCAGTGCC TGATGAGGTA
GAAATTACTT CGACACGCGA ACCAAAACAG TACGAATATG CAAAACCAGT CGAGTAA
 
Protein sequence
MVSMFSHSPQ GDDILHKMRR QKAHDRESDE TQTGSFPAVH RKVKSSLSGH VTRARIFTGF 
LMMLLCALLG FAYMIQVNRS NSLLYETMSE EELTRLITET HSQIQSLESR KSELTGQLNS
LREAVDKQDE ARRIAQQNAQ ANGLISGRLP AVGKGIVVHI TAGEKENIDA ATMFQLIEEL
RNAGVEVMSI NGVRIVTSSY ISQTKHGLIC DNIMIDPPYI VKAIGDPQNL QNAVNIAGGV
GSRLKIKFGS SVMVSVPDEV EITSTREPKQ YEYAKPVE