Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0799 |
Symbol | |
ID | 8709925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 904208 |
End bp | 905044 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646482900 |
Product | hypothetical protein |
Protein accession | YP_003374017 |
Protein GI | 283783263 |
COG category | [S] Function unknown |
COG ID | [COG3879] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTCAA TGTTTTCTCA TTCTCCACAA GGTGATGATA TTCTTCATAA AATGCGTCGT CAAAAAGCGC ATGATCGTGA AAGTGATGAA ACTCAAACTG GATCTTTCCC AGCAGTTCAT CGTAAAGTAA AATCTTCACT AAGTGGTCAT GTGACGCGGG CGCGTATATT TACGGGCTTT TTAATGATGT TGCTCTGCGC TTTATTAGGT TTTGCGTACA TGATTCAAGT TAATCGTAGT AACTCACTTT TGTATGAAAC AATGAGTGAA GAGGAGTTGA CGCGTCTTAT TACAGAAACT CATTCTCAAA TTCAGAGTTT GGAAAGCCGA AAAAGTGAAT TAACAGGTCA GCTTAATTCG TTGCGTGAAG CAGTAGATAA ACAAGATGAA GCTCGTCGCA TTGCTCAGCA GAATGCTCAA GCAAATGGTC TTATTTCTGG ACGTCTGCCG GCAGTAGGTA AAGGTATTGT AGTTCACATT ACCGCAGGTG AAAAAGAGAA TATTGATGCC GCTACGATGT TTCAGCTAAT AGAGGAATTG CGAAATGCTG GCGTAGAAGT TATGTCTATT AACGGTGTGA GAATAGTTAC TTCAAGCTAT ATTTCACAAA CTAAGCATGG TCTTATATGT GACAATATTA TGATTGATCC TCCTTATATT GTGAAAGCAA TTGGTGACCC TCAGAATTTG CAAAATGCTG TTAATATTGC AGGCGGTGTT GGGTCGCGTT TAAAAATTAA ATTTGGTTCT TCTGTAATGG TTTCAGTGCC TGATGAGGTA GAAATTACTT CGACACGCGA ACCAAAACAG TACGAATATG CAAAACCAGT CGAGTAA
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Protein sequence | MVSMFSHSPQ GDDILHKMRR QKAHDRESDE TQTGSFPAVH RKVKSSLSGH VTRARIFTGF LMMLLCALLG FAYMIQVNRS NSLLYETMSE EELTRLITET HSQIQSLESR KSELTGQLNS LREAVDKQDE ARRIAQQNAQ ANGLISGRLP AVGKGIVVHI TAGEKENIDA ATMFQLIEEL RNAGVEVMSI NGVRIVTSSY ISQTKHGLIC DNIMIDPPYI VKAIGDPQNL QNAVNIAGGV GSRLKIKFGS SVMVSVPDEV EITSTREPKQ YEYAKPVE
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