Gene HMPREF0424_0797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0797 
Symbol 
ID8709769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp903166 
End bp903771 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content40% 
IMG OID646482898 
Producthypothetical protein 
Protein accessionYP_003374015 
Protein GI283783261 
COG category[K] Transcription 
COG ID[COG0789] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAGT CACAGTCCGA TAATGTGATT AACGCAGTAC AGGGGGAGCT TTTTAATTTT 
TCTCTGTCTG CTGATCACGC TTCAGGATAC CGTGGTAGTG TCGCTATGAA GGTTGCCGGT 
ATTACTTACC GGCAACTCGA TTATTGGGCT CGTAAAAGCA TTATAGAGCC TTCAATTCAT 
GCATCTAGCG GTTCTGGTTC TCGTCGTTTG TATTCTTTTA AGGATATTGC GATTATGGCT 
GTAGCTAAAA GGCTGCTTGA TGCTGGCGTT AATTTAGTTA ATGTTACTAC GGCTATTATT 
TTTCTTAATC GATACTCAGA AGAGCGTTTG AGAAATATGA CTATTATTTG TGATGGTCAA 
TCTGTTCAAG AGTGCGATGA GAATCAAGAT AATATGCGTA GTATGCTTGC TTCTGGTTTA 
GCAGTATTTG CTATTGCTGT TGGCCGCATT GTTTCTAGAG TTGAAGAGGA CTTATCTTCT 
GAAAATTCTG TTGATGCTAC GCAAGTTGAA GAAAAAAGTA GTAAGTCTAC TCGCAAATCT 
TATTCAAAAC CTACTTCTCA TACATCTTCA AACTCATGGA GTCTTGTTCA GGAAACGTGG 
GGATAA
 
Protein sequence
MTQSQSDNVI NAVQGELFNF SLSADHASGY RGSVAMKVAG ITYRQLDYWA RKSIIEPSIH 
ASSGSGSRRL YSFKDIAIMA VAKRLLDAGV NLVNVTTAII FLNRYSEERL RNMTIICDGQ 
SVQECDENQD NMRSMLASGL AVFAIAVGRI VSRVEEDLSS ENSVDATQVE EKSSKSTRKS 
YSKPTSHTSS NSWSLVQETW G