| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0791 |
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| Symbol | |
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| ID | 8709136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 896414 |
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| End bp | 898333 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482892 |
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| Product | hypothetical protein |
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| Protein accession | YP_003374009 |
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| Protein GI | 283783255 |
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| COG category | [K] Transcription |
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| COG ID | [COG2378] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.654637 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGAAG GAAGCAACGG AAGGCGACGT TTTTCCGACA AATGGGGCAA ACACGAGTTA
GATGTACTCG CTGTATTGTC TTCCGCATTC CCGCAATGGC TGACTTCGCG TCAAATTGCA
CAGCGCGTAA AGGCATATGC AGATTCATAC GGTGAGCTTG CAGATCAAGC AGCTAAAGCA
GCATTCGCAA AACAGTTCCA GCGAGATCGC GCAAAGCTTG CTGCTATGGG TATTGCAATA
GAGTCTAGGC AGCCAGAATA TTCTTCGAAG TCCGAAGGTC AAGACTTTGC GTCTTATCGT
TTGCAATTAG GCGATGAGCC TCGCGTACGT TTACGTTTCG ACCAATCTGA ATTACCAGTT
TTAGCTGCAG CAAATTATCT TGCTCGTTCA ATGTCTATTT CTTCTCTTGA TTCAGGTCAA
CACGAGCAAC AGCGCACTTC TCGCACTGCT CCTAGAGTTC CACAAACTCC TATTCCTGGC
TTAGGATTAG ATTCAATCGC ACCTGGTCTT GGAACACAAA TGCTACCTGA TTCATTGGTA
AAAGTTATTG ATTCTCGCAG ATTTGCCGCA ACTGTGGATG TCGATGGTGA ACATTTAAAC
GTTGCTTATA CTGATGCTGA CGATTTAGCG ATGTTTGTAC TAGAACATCC TGGATCTAGC
GTAGTAAGCC CTCAAGAAGC AGTTGATGCT TTCCATCGCC GTTTGCACGC AGCAGTTAAT
TTTGCTCAAT ATGACGAAAA TGAGCAAAAA GATGAAGAAG GTGCTATACA AGAAGCGCAA
AATATTGAAG AACAAAATAG CAACACTGAT AAATCGCATA CCAAAAAAGG CTCTTCATTC
CAAACTGGAA GTGAAGTAGA TCGTAGGCTT CGATTGATGC TTTTCTTGTC TGCTCATCTT
GGAGAGGAAT TCCCATTAGA CGAGCTTGCT GAGCGTTTTA TTGGTAGACC AAAAAGCGAT
GATGAACTTC GTCGATTTGT TACAATTCTT CACAAGGATA TAAATACTCT TACTACTGTT
TCTGACGATG GGGAAATGGC CGGAAGCCAA TTCTTTGATA TAGATTGGAC TCTTCTTGAG
AACGAGGGAA TTGTTTCTGC TACTAACTCT TTAGGATTGG AAAGACTTGC TGGAATTTCA
CAGCAATATT TGAGCATGCT TACTGCGTCT GCTAATTATT TGGCGCATTC CTTGCTTTTG
CCTATTGAAC AGCGCACACA AGCTGAATCC TTGTATAAGC GTCTTCGCCG TCATGTTCTT
CCTGGTCAAA CTCCATGGCT GAGTTTAACA GGTTACGAAA TTGAGCCTCG AAATTGTTCT
ATTGTTCGTA GTGCTATTAA CTCTGGATCT TTACTAGATA TGGAATACAC TGACGGGGCA
GGACGTATTC GTCGCAAGAT TGTTGCACCG TCGAAGATTT ACGTTGATGA AGGCGTTTAC
TATGTTGCAG TATGGACTGA TGTAGAGCAG CAAACGCCAG AAGATAAACG TGAATTTGTT
GCTAAAGATA CGACAATTAA TAAAGCGAAT GGATTGCCTC GCATTTGGCA AGTTCTTCGC
GTAGCACGTA TTGAACGTGC AGAAGTTGTA GAGCCTGTAT CTCAAGTTAA AATTCCAGAT
GTGCCAGTTA GTGAACTTCG CAAGTGGAGC TTTGATAACG GAACTGAAAC TTGCTTCATT
ACCGATGAAA CAGAATTGAA CTTTTTGAAG AATCTTTCTG GAGCCACTAT GGAAACTTGT
GGCAGCGGAG TAAAAGTCCA TCTTACTGTT TCTTCTGATT CATGGTTCGT TGCTTTTTGC
ATTGCTCACG CACGTCATAT TACAGCTGTT GCTCCTGAAA CATTGCGCAG TATGATTATT
GCTCGCGCTC AACGTGAATT AAGCGTTAAT CACGCTGATA ATGCGAATAC AGAGGAATAA
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| Protein sequence | MVEGSNGRRR FSDKWGKHEL DVLAVLSSAF PQWLTSRQIA QRVKAYADSY GELADQAAKA
AFAKQFQRDR AKLAAMGIAI ESRQPEYSSK SEGQDFASYR LQLGDEPRVR LRFDQSELPV
LAAANYLARS MSISSLDSGQ HEQQRTSRTA PRVPQTPIPG LGLDSIAPGL GTQMLPDSLV
KVIDSRRFAA TVDVDGEHLN VAYTDADDLA MFVLEHPGSS VVSPQEAVDA FHRRLHAAVN
FAQYDENEQK DEEGAIQEAQ NIEEQNSNTD KSHTKKGSSF QTGSEVDRRL RLMLFLSAHL
GEEFPLDELA ERFIGRPKSD DELRRFVTIL HKDINTLTTV SDDGEMAGSQ FFDIDWTLLE
NEGIVSATNS LGLERLAGIS QQYLSMLTAS ANYLAHSLLL PIEQRTQAES LYKRLRRHVL
PGQTPWLSLT GYEIEPRNCS IVRSAINSGS LLDMEYTDGA GRIRRKIVAP SKIYVDEGVY
YVAVWTDVEQ QTPEDKREFV AKDTTINKAN GLPRIWQVLR VARIERAEVV EPVSQVKIPD
VPVSELRKWS FDNGTETCFI TDETELNFLK NLSGATMETC GSGVKVHLTV SSDSWFVAFC
IAHARHITAV APETLRSMII ARAQRELSVN HADNANTEE
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