| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0790 |
|---|
| Symbol | |
|---|
| ID | 8709062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 894682 |
|---|
| End bp | 896121 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 646482891 |
|---|
| Product | UTP--glucose-1-phosphate uridylyltransferase |
|---|
| Protein accession | YP_003374008 |
|---|
| Protein GI | 283783254 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4284] UDP-glucose pyrophosphorylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.772556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACG CGTTTGAGTT GTCCGCTGCA AAGATGCGCG AACAAGGCAT GAGCGAAATT
GCTATTGAAC AATTTAAACA CTTATATAAT GCTTGGAATT TAGATAAATC AGGGGATAAG
TCTGCGGAGT TTATTCGCGA GAGCACGGTT GAGCCTATTA AAAGCGTTCC AACTTTCCAC
GAAATTTACG AAACTATTGA TCACGACAAA GCTGTTAACG CATTCGCAAA AACTGCTTTT
ATTAAATTAA ATGGCGGTTT GGGAACATCT ATGGGCTTGT CTTGCGCAAA ATCTTTACTA
CCAGTTCGTA GGCATAAAGC TCGCCAAATG CGCTTTATTG ATATTATTAT TGGACAAGTT
CTTACAGCTC GTCAGCGATT AGGAGTTAAT CTTCCGCTTA TTTTCATGAA TTCTTTCCGC
ACGTCTCATG ATACTTTGCA AGTACTAAAA CGCAATCGCA AGTTTGTGCA AGACAATATT
CCTGTAGAAA TTATTCAACA TCAAGAACCA AAATTAGCAG AGGAAACTGG AGAACCGGTT
TCTCACAAGG AAGATCGATC TCTTGAATGG TGTCCTCCAG GTCACGGCGA TATTTTTTCA
ACTCTGTGGG AATCTGATTT ATTGCATACT CTTAAAGAAA ATGGAATTGA GTATTTGTTT
ATTTCAAATT CTGACAATTT AGGTGCTAGA CCGTCGCGCA CTCTTGCTCA ACATTTTGAA
AATACTGGCG CACCTATCCT GATTGAGGTT GCGAAGCGAA CTCAAGCAGA TCGTAAGGGC
GGTCACATTG TTAGGGACGC GAAAACAGGA AGACTAATGC TACGAGAAAT GACACAGGTT
CATCCTGAGG ATCGTAGAAG CGCACAAAGC ATTAAAAAAC ATCCATACTT CAACACAAAT
AATATTTGGG TTCGTGTAGA TGCTCTAGAA AAAAAGTTAA AAGAGCACAA AGGGATTTTG
CCTTTGCCTG TTATTTTTAA TCACAAAACT GTTGACCCAA CTGACGAAAG CAGCACTCCG
GTAGTGCAAT TGGAAACAGC AATGGGAGCA ATAGCTTCAC TTTTCGATGA CGCAATTTGC
GTAGAAGTTG ATCGCATGCG TTTCTTGCCT GTTAAAACAA CCAATGACTT ATTTATTATG
CGATCAGATA GATTCCATCT TACTGATTCA TATGAAATGG AAGATGGTAA CTATATATTT
CCTGATATTG ATTTGGATCC ACGTTATTAC AAAAACATCA ATGATTTCAA CGAAAGATTC
CCATATTCTG TTCCAGCTTT AGCTGCTGCA AAATCAGTAA CTATTAGGGG AGATTGGACA
TTTGGAAACC AAGTTTCAAT GTTTGCTGAC GCTGTTTTAG AAGATACAGG AGAACCAAGT
TATGTGCCAA ATGGAGAATT CGTGGGACCG CAAGGAATTG AACCAGACTC TTGGGTTTAA
|
|---|
| Protein sequence | MDDAFELSAA KMREQGMSEI AIEQFKHLYN AWNLDKSGDK SAEFIRESTV EPIKSVPTFH
EIYETIDHDK AVNAFAKTAF IKLNGGLGTS MGLSCAKSLL PVRRHKARQM RFIDIIIGQV
LTARQRLGVN LPLIFMNSFR TSHDTLQVLK RNRKFVQDNI PVEIIQHQEP KLAEETGEPV
SHKEDRSLEW CPPGHGDIFS TLWESDLLHT LKENGIEYLF ISNSDNLGAR PSRTLAQHFE
NTGAPILIEV AKRTQADRKG GHIVRDAKTG RLMLREMTQV HPEDRRSAQS IKKHPYFNTN
NIWVRVDALE KKLKEHKGIL PLPVIFNHKT VDPTDESSTP VVQLETAMGA IASLFDDAIC
VEVDRMRFLP VKTTNDLFIM RSDRFHLTDS YEMEDGNYIF PDIDLDPRYY KNINDFNERF
PYSVPALAAA KSVTIRGDWT FGNQVSMFAD AVLEDTGEPS YVPNGEFVGP QGIEPDSWV
|
|---|
| |