| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0788 |
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| Symbol | |
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| ID | 8709429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 892704 |
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| End bp | 893381 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482889 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374006 |
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| Protein GI | 283783252 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATT TTATGCAGCT ATTTACCTCC TACAATATTC CAGGAGCATT CTTGGTTAAT
ATTGAAATAA CTTTATGGAG TGTACTTTTT TCATCAATTA TTGGCGTAAT TCTTGTTACT
ATGCGCATTT GCCCTGTTTC ATCATTACGC ATGATTGCTA CAGTTTATGT TGAATTGTTT
AAAAACATGC CACTTACCAT CATTATGGTT TTCATGGTTT TAGGCGTTTA CGCTCAGCTT
AAGATAGGAT TCTCCTCAAT TTTTGAAGTG AATTTCTTCT GGCTGGCAGT TGCTGGATTG
TCGCTTTATA CTGCAGCATT TGTTTGCGAA TCATTGAGAT CTGGTCTTAA TACCGTGCCT
GTTGGCCAAG CAGAAGCTTG CCGCGCTCTT GGATTAAATT TCTTCCAATC TGCAACACAA
GTAATTCTTC CACAAACTTT CTGCGGTTCA GTAGCACCAT TAGGTAATAC ATTTATTGCT
TTGCTTAAGA ATTCTACAGT TGCTGCTGCT GCATCAGTTG CCACTGAGAC TTCAACAATG
ATGAGCGAAA TGATTGAGAA ACATGCAGAT TTGATTGTTC CAATCTTCTT AATTTTCGCT
TGCGGATACA TTATGCTCAT CATTCCTATC GGCATTTTGA CTACTTATTT GTCAAATAAA
CTTGCTGTGA GAAGGTGA
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| Protein sequence | MQDFMQLFTS YNIPGAFLVN IEITLWSVLF SSIIGVILVT MRICPVSSLR MIATVYVELF
KNMPLTIIMV FMVLGVYAQL KIGFSSIFEV NFFWLAVAGL SLYTAAFVCE SLRSGLNTVP
VGQAEACRAL GLNFFQSATQ VILPQTFCGS VAPLGNTFIA LLKNSTVAAA ASVATETSTM
MSEMIEKHAD LIVPIFLIFA CGYIMLIIPI GILTTYLSNK LAVRR
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