| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0784 |
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| Symbol | hisS |
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| ID | 8709561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 887503 |
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| End bp | 888951 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482885 |
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| Product | histidine--tRNA ligase |
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| Protein accession | YP_003374002 |
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| Protein GI | 283783248 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0124] Histidyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00442] histidyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGGTAA GCCATGATTT TTCCGCAACA CCACCTATTA TAGTGGACAT GGTACAAGGC
TCATCAATAT CGGGTTTCCC TGAATGGCTT CCTAGTGAAC GCGCTGTTGA ACAGCAAGTA
ATTGACACAC TAAGAGAAGT GTTTGAACTC AACGGTTTTA TTGGAATTGA AACGCGTGCA
GTAGAACAGG GTTCAAGCTT ATTAAAAAAA GGCGAAACCA GTAAAGAAAT TTATTTATTA
TCGCGTTTAC AAGAAGTTGG TCACGAATCC GACACTCCTG TAGAAGAACG CATTGGCTTA
CATTTCGATT TAACAGTTCC ACTCAGCCGT TACGTCGTTG AGCATACTGG CGATTTGACG
TTCCCATTTA AGCGCTGGCA AATGCAAAAA GTTTGGCGAG GGGAGCGTCC ACAAGAAGGT
CGTTTCCGTG AGTTTGTTCA AGCAGATATC GATGTCGTAG GAAATGGCGA ATTACCTTCA
CACTACGAAG TTGAACTTCC ACTTGTTATG GTTGAAGCTC TTGAGCGTTT ACGTAAGTTT
GGTCTTCCTA AGGCAACTGT TCATGCTAAT AATCGAAAGC TTTCTGAAGG TTTTTATCGC
GGTATTGGAT TAAGCGATAT CGAGGGAGTT CTTCGAGAAA TCGATAAGCT AGACAAAATT
GGCGCTGAAG AAGTATCCAA GCTTTTGGTA AAAGAATGCG GCGCTACGGC TTCTCAAGCT
GATGCATGCT TAGAATTAGC TGAACTTACT GCCGAAACAG GAGATGAGTT GAAGTCTCGT
TTCAACGAAT TATGCGATAA GCATAATATT TCTCGAAGTG ATGATAACGA GTCTTACGTT
TTAGCTTCTC AAGGTGTTGA AACTCTTGCG ATGATTGTAG ACGAAGCAGC ACGTATTCGC
CCAGGCGCTG TTGTTGCTGA TTTGAAGATT GCTCGTGGAC TTGACTACTA TACTGGTTCT
GTTTACGAAA CTTTCCTTGA TAATGCAGCA TCTCTTGGTT CAATTTGCTC TGGTGGACGT
TACGATAATT TAGTTTCACA GGGCAAGAAG AAGTATCCAG GCGTAGGACT TTCAATTGGC
ATGTCTCGAC TGCTTTCTTA TATGCTTCAC ACTGCAGGAG CTACTGTTTC CCGAGTTTCT
CCTGCTGCAG TACTTGTTGC AGTGTGGAAT GAAGAAGATC GTCCTGCATG CAATGCTATT
GCTAAAACTT TACGAGATCG AGGCATTGCA GCAGATGTTG CTCCTAGCGC AGCAAAGCTT
GGTAAGCAAA TAAAATATGC TGACAAGCTC GGCATTCCTT ATGTGTGGTT CCCTGCTGAT
AGCACTGAAT CAGAGTCATC TCACGATGAA GTAAAAAATA TTATTACTGG CGAACAGGAA
ACCGCGGATG CCACGTCTTG GCAACCGGAT ACTGTTTATG CCCGGCAGAC AGTTTCTTGC
GCTAAATAA
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| Protein sequence | MTVSHDFSAT PPIIVDMVQG SSISGFPEWL PSERAVEQQV IDTLREVFEL NGFIGIETRA
VEQGSSLLKK GETSKEIYLL SRLQEVGHES DTPVEERIGL HFDLTVPLSR YVVEHTGDLT
FPFKRWQMQK VWRGERPQEG RFREFVQADI DVVGNGELPS HYEVELPLVM VEALERLRKF
GLPKATVHAN NRKLSEGFYR GIGLSDIEGV LREIDKLDKI GAEEVSKLLV KECGATASQA
DACLELAELT AETGDELKSR FNELCDKHNI SRSDDNESYV LASQGVETLA MIVDEAARIR
PGAVVADLKI ARGLDYYTGS VYETFLDNAA SLGSICSGGR YDNLVSQGKK KYPGVGLSIG
MSRLLSYMLH TAGATVSRVS PAAVLVAVWN EEDRPACNAI AKTLRDRGIA ADVAPSAAKL
GKQIKYADKL GIPYVWFPAD STESESSHDE VKNIITGEQE TADATSWQPD TVYARQTVSC
AK
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