Gene HMPREF0424_0777 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0777 
SymbolthiF 
ID8708834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp876593 
End bp877216 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content38% 
IMG OID646482878 
Productthiamine biosynthesis protein ThiF 
Protein accessionYP_003373996 
Protein GI283783242 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 
TIGRFAM ID[TIGR02354] thiamine biosynthesis protein ThiF, family 2 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.21058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAGTG ACGATATTCG CGCAAAAGTT CTTAAACGTC AGCTAAAGGA AGATAATGAT 
TTGTTTGCTC AACAATCAGT TTCAATACTT GGCTGCGGCG GTTTGGGATC AAATATTGCG
TTAATGCTTG CGCGAGCCGG CGTAAAAAAG TTGTACATTT ACGATTTTGA CAGTATCGAG
TATTCGAATT TAAACCGTCA AAATTATACG ATTAACGAAA TTGGACAACA CAAAGTATAT
GCTACTAAAG CGCGACTTAA TGAAACTTTG CCGTACGTTG AAGTAGAAGC TTTTGTGCAA
AAAGTTACGC CGGAATCGTT GGATGAGATT GCTGAACGCT CCGACTTGTT TATTGAAGCA
TTCGACAATC GCGAATCGAA AGCAATGGTT CTTGACTATT TCATGAATCA TCCTAACAAA
TATGTTATTA CTGCTTCTGG CTTATCTGGA CTAGGAGATA TTAGGAACGT AAAAATTAAG
CATCTTTCAA ACGTGTGCTT AGTGGGTGAT TTTAAGTCTT CTCCCGAAGA AGGCTTGTAT
TTGCCTTATG TTTCGATTAT CGCAAGTTTA GAAGCCTTAG AAGCGTTGAA ATGGATAAAA
AATGGAGGAA ATTATGGAGA ATGA
 
Protein sequence
MESDDIRAKV LKRQLKEDND LFAQQSVSIL GCGGLGSNIA LMLARAGVKK LYIYDFDSIE 
YSNLNRQNYT INEIGQHKVY ATKARLNETL PYVEVEAFVQ KVTPESLDEI AERSDLFIEA
FDNRESKAMV LDYFMNHPNK YVITASGLSG LGDIRNVKIK HLSNVCLVGD FKSSPEEGLY
LPYVSIIASL EALEALKWIK NGGNYGE