| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0774 |
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| Symbol | ncs |
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| ID | 8709319 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 873472 |
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| End bp | 874956 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482875 |
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| Product | NCS1 nucleoside transporter family protein |
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| Protein accession | YP_003373993 |
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| Protein GI | 283783239 |
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| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
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| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.182472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATTA GTAAACTGCT ACAAGATGAG CCAGTAGCTA GTAAAAACTT GGAATGTTAC
CGCGAGCGCG GCTACACTAA CGAAGATTTA CTGCCAAAGC CGCAAGAAAA ACGCACAATG
AGCGCTCTTA ATTTCTGCAC TTTGTGGATG CAGTCTGTAC ACAATATTCC TAATTATGCT
GCAGTTGGCG CGTTCCTTTT GATGGGATAC TCTCCAATTT ACGTAATGAT TGGTATCATG
CTTGGCGCAA TTCTTACAGC AATTGTCATG GTTGCTAACG GTGTTGTAGG TTCCAAATAC
GGCATACCGT TTTCTATGCA TTTGCGCGCA ACATATGGAA AAGCAGGTGC TCAACTACCA
GGATTCCTCA GGGGAGTAGT TGCTGCAATA TGCTGGTATG GAATTCAAAC ATATATAGGT
GCGAAAGCTT TAGAGATTCT AGTTGGCAAA ATTTGCCCTG AGTTTCTTAC GTTTGGAAAC
GAAATACCAT TTGTTGGTTC GCACATACCT ATTATTATTT CCTTCGCAAT ATTTTGGTTG
CTTAATTTGG CGATTGGTTT AGGCGGAGGA AAGACTCTTA ATAAGCTAAC TGTAGTATTA
AGCCCACTTA TTTACGTTGT TTTTGGTTGC ATGAGCGTAT GGGCTATTAG CTGTGCTGGT
GGTTTATCTG CAATCATGCA ATATCATGCT ACTGTTCAAG CGCCAACTAA TTACGGTCTT
GGGCTTTTCA TGATGATGGT TGTAAATTCT GTGCTGGGCG TTTGGGCTGC TCCTGCCGTT
TCTATTGCTG ATTTTACGCA AAATGCAAAG TCAACTATGG CTCAACTAAA AGGTCAAATT
GCTAGCTTCT TGCTAAGTTA CGCGCTTTTT GCTTTTACAA GCGTAGTTAT TTTAGTGGGC
GGATCGCTTT TTTACCATGA AACTATTACA GATGTTCTTG TCATCATAAA CAAGTGGGAT
AATCTTCCTG CAATTGCAAT AGCTACTGGG TTGCTTCTAC TTACTACAGT TTGCACAAAT
GCTACTGGCA ATATTGTTCC TGCAGCATAC CAGCTAACTG CTTTAGCTCC GCGATTTGTA
AATTATAAGC GTGGCGTAGT TATTGCAGCT CTTGTAAGCA CTGTGCTAAT GCCGTGGAAG
TTTATGGCTA ATATTACAGG CTTCTTGAAT CTTATTGGCA TGCTTTTAGG CCCTATTGCA
GGTGTTCTAC TTGCCGACTA TTACGTAGTA AAGCGCACGC ATATTGATCT TGATCAAATT
TATTACGATA CAAATAGCTC GTCAAAATCT GCTTATTCTG GAACTAACTG GATATCTTAT
ACTTCTACGA TACTTGGGCT TTTATTTGCT CTTTCCGGGC AGATAATTCC TCTACTTTCA
CCGCTTACTC AAATCTCATG GATTGTGGGA TGCGCTGTAG GCTTCGTGTG TCAAATATTA
CTATCAAAAG TTTTTCAGCC AACAATGGCT AAAGAAAGGA AATAA
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| Protein sequence | MQISKLLQDE PVASKNLECY RERGYTNEDL LPKPQEKRTM SALNFCTLWM QSVHNIPNYA
AVGAFLLMGY SPIYVMIGIM LGAILTAIVM VANGVVGSKY GIPFSMHLRA TYGKAGAQLP
GFLRGVVAAI CWYGIQTYIG AKALEILVGK ICPEFLTFGN EIPFVGSHIP IIISFAIFWL
LNLAIGLGGG KTLNKLTVVL SPLIYVVFGC MSVWAISCAG GLSAIMQYHA TVQAPTNYGL
GLFMMMVVNS VLGVWAAPAV SIADFTQNAK STMAQLKGQI ASFLLSYALF AFTSVVILVG
GSLFYHETIT DVLVIINKWD NLPAIAIATG LLLLTTVCTN ATGNIVPAAY QLTALAPRFV
NYKRGVVIAA LVSTVLMPWK FMANITGFLN LIGMLLGPIA GVLLADYYVV KRTHIDLDQI
YYDTNSSSKS AYSGTNWISY TSTILGLLFA LSGQIIPLLS PLTQISWIVG CAVGFVCQIL
LSKVFQPTMA KERK
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