| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0773 |
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| Symbol | |
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| ID | 8710034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 871921 |
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| End bp | 873162 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482874 |
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| Product | allantoate amidohydrolase |
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| Protein accession | YP_003373992 |
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| Protein GI | 283783238 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0747275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATA GCAGCATAAG TGCTGAAACT ATAGAATCGG CCATAAGCTG GCTTGCAGGA
TTCACAGAAA AACCAGGAGA ACAAGGAGTT ACTCGACCTC TTTACACAAA ATCTTGGAAA
CAGGCTCTTT TTGCTCTTCG TCAACGATTT GAAAAACTCG GTATGACTGT AGAATTCGAC
CAAGTTGGAA ACCTAATTGC AACTGTTGAA GGATGCGAAA AACCAGAAAG CATAATAGCT
TGTGGATCGC ATATTGACAC AGTTTCAAGA GGAGGTCGTT TTGACGGCCA ACTTGGAATA
GTTGCAGCCT ATTTAGCAAT TAAGAATTTA CTTACTAGAT ATGGAAAGCC AAAGAAAAGT
CTTCGCATTA TCTGCTTAGC AGAAGAGGAA GGCTCACGTT TCCCATACGT ATTCTGGGGT
TCAAAGAATT TCTTCGGACT AGCCCAAAAA GAGGACGTAG AAAATATTTG CGACAGCGAA
GGTGTTCCTT TCGAAACAGC AATGCGTGAA GCTGGGTTCA ATTATCAAAC AACTCAACCT
AAGTTCGCAA ATCTTGAAGC CTGGATTGAG CTACACATTG AGCAGGGACC AACGCTTTAC
AGCAATCACG AAGATTTAGG TATTATCACT AGCATTGCTG GTCAGCATCG TTGGGATATT
CATCTTAAAG GCGTACAAAA TCACGCTGGC ACAACAATGA TGTCCTACAG GCACGATGCA
GTAGATTGCA TGTCTCATAT AATCGCCAAG AATCTTGACA AAGCCAAGCA AGCAGGCGAC
CCACTGGTGC TTACTTTCGG TAGAATCAGC GTAGTTCCAA ATCAAGTAAA TATTGTTCCT
GGAGAAGTTA CTTTTTCAAT GAACTGCCGT CATACAGATA AAGCTTTTCT TGATAAATTC
CTGCAGGAAC TCGACGAGGA TATTCACGAA ACTGCCAAGT CTTATGGCAT TACAGCGCAG
ATTGATAAGT GGATGTCTGA CGATCCTACA CCACTTAACG ACGATATTAT TAATCTTTTG
AAAGATCAAG CTAATAAGCA AGGTTATGCA TACAGAGTCA TGCATTCAGG TGCTGGTCAA
GATACGCAAA TTTTTGCTCC GTTTGTAAAA TCCGGAATGA TTTTCGTTCC TTCAAAAGAT
GGTATTAGTC ACGCTCCAGA AGAGTACACA GATCCGCAAG ACGCTGTTCA CGGAGTAAAG
CTTTTACGAG ATGCTCTGCA TAGTTTGGCT TATGAGGACT AA
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| Protein sequence | MIDSSISAET IESAISWLAG FTEKPGEQGV TRPLYTKSWK QALFALRQRF EKLGMTVEFD
QVGNLIATVE GCEKPESIIA CGSHIDTVSR GGRFDGQLGI VAAYLAIKNL LTRYGKPKKS
LRIICLAEEE GSRFPYVFWG SKNFFGLAQK EDVENICDSE GVPFETAMRE AGFNYQTTQP
KFANLEAWIE LHIEQGPTLY SNHEDLGIIT SIAGQHRWDI HLKGVQNHAG TTMMSYRHDA
VDCMSHIIAK NLDKAKQAGD PLVLTFGRIS VVPNQVNIVP GEVTFSMNCR HTDKAFLDKF
LQELDEDIHE TAKSYGITAQ IDKWMSDDPT PLNDDIINLL KDQANKQGYA YRVMHSGAGQ
DTQIFAPFVK SGMIFVPSKD GISHAPEEYT DPQDAVHGVK LLRDALHSLA YED
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