| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0763 |
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| Symbol | casD |
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| ID | 8709782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 866475 |
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| End bp | 867350 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 646482865 |
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| Product | CRISPR system CASCADE complex protein CasD |
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| Protein accession | YP_003373987 |
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| Protein GI | 283783233 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01868] CRISPR system CASCADE complex protein CasD/Cas5e
[TIGR02593] CRISPR-associated protein Cas5, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0747275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTT TATTACTGAA GTTTTCTGGA CCTTTGCAAT CATGGGGTAC AGATTCTCAT
TTTGAAACTC GTCACACGGA TTACTATCCA TCTAAAAGTG CGGTAATAGG TATGATTGCT
GCAGCTTTTG GGTATAGAAG AAGTACAGAT TGTGATGAAA ATATTGCGAA ACTTAATGAT
TTAGATTTTG CAGTGCGAAT TGATCAGCAA GGGAATTTGC TTAGGGATTA TCATATTGCT
GCAAAATATA AAGCTAACGG TGATTTTGAA AAAAATTACG TTACAAATCG TTACTATCTA
GAAGATGCTA TATTCCTAGT TGCAATAGGA TCCAACAATG AGCAACTTAT TTATGATATT
AGCAATGCTT TGCGCTCGCC ATATTTTCAA TCTAGTTTAG GCAGAAGGTC ATTGCCTCCT
ACTGCTGACT TCATCCTAGG AGTAGAAGAT TGTGGAGTGA TTCAGGCTCT ATTAACGCAT
GAGTGGCTTG CAAACAAGTG GTCTAAAAAA AGATTTAATA CTTCTAAACT ATCTGAAGCA
TCAGAGTCTT CTAATGAATC ATGCAATGAA GTATTTATAT CCTTATACGC TGATTCTGTT
TTAGTAGATA AAGCTGCATC AGAATTAGTT AAAGACGATA ATACTACTTA TAAAATTCAG
GAATCAGTTC GTAGATTACG CAAGGATTAC GTTAATTCTT TCTCAAATAA GGAAAGAAAA
TTTGGATTTC GATACGAGTC AAAAATGGAA ATTCCTATTG AGAAAATTTC ACACAATAAT
TTGGATTCGG AAGATATTTC ATCAGATAGT AAACATCTTA AATCTGTTGG AGAGTTTATT
GCTGAGCATG ATGCTTTTTC TGGATTGGAG TCTTAA
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| Protein sequence | MKSLLLKFSG PLQSWGTDSH FETRHTDYYP SKSAVIGMIA AAFGYRRSTD CDENIAKLND
LDFAVRIDQQ GNLLRDYHIA AKYKANGDFE KNYVTNRYYL EDAIFLVAIG SNNEQLIYDI
SNALRSPYFQ SSLGRRSLPP TADFILGVED CGVIQALLTH EWLANKWSKK RFNTSKLSEA
SESSNESCNE VFISLYADSV LVDKAASELV KDDNTTYKIQ ESVRRLRKDY VNSFSNKERK
FGFRYESKME IPIEKISHNN LDSEDISSDS KHLKSVGEFI AEHDAFSGLE S
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