| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0762 |
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| Symbol | casC |
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| ID | 8709545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 865328 |
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| End bp | 866416 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 646482864 |
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| Product | CRISPR system CASCADE complex protein CasC |
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| Protein accession | YP_003373986 |
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| Protein GI | 283783232 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0450827 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACTCTC GTTTATTCTT AGATATTCAA GCAATCCAAA GTGTTCCTCC ATGCAATATT
AATCGTGATG ATGCAGGTAG CCCAAAAACT GCTCAATATG GCGGTGTAAC TAGAGCTAGA
GTAAGTTCCC AATGTTGGAA GCACTCAATG CGTGAATACT TCAAAGAACA CAGCGGAGAT
TCCAATGTTG GAATGCGAAG CAAAAATATT GTTAAATACG TTGCTGATAA AATCATTACG
TTAAAACCAG AATTATCTGA ACAAGAAGCA TTAGATTTAG CAAATAAAAC GTTAAATAAT
GCTGGCTTTA AAACTAAAAC AGATAAGGGT AAAATAATTC CTGTAGTAAA TGTTCTATTT
TTCTTAGGTG AAAATCAAGC GAATTCTCTA GCACAAGCAG CAATCAATAA TGTTACTGAC
AAGAAGCAGC TGGAAGAAAT ATTGAAAGAT AATCCACCTA TTGATATTGC GTTATTCGGT
CGTATGCTTG CAGACAATCC ATCCCTTAAT GAAGATGCTT CTTCTCAAGT TGCTCACGCA
ATTTCCACTC ACGCTGTTCG CGCTGAATTT GATTACTATA CTGCTGTTGA TGATTTATCT
GTGGATGATA ATGCTGGAGC TGGAATGCTG GGCACAATAG AATATAATTC TTCAACGCTG
TATCGTTATG CAAATGTTGC AATACATGAA TTTAGTCATC AGTTGAGCGA TAACAAAGAA
TCTACAATTA ATGCTCTTAA GCTTTTTATT GAAGCTTTCG CTAATGCAAT GCCTACTGGA
AAAGTAAATA CTTTTGCGAA TCAAACTTTG CCGCAAATGC TTGTAGTGAC TTTGAGAGAG
GACAGACCAG TGAATTTAGT TAGCGCATTT GAAGATCCAG TAAAAGCAAA AGACGGATAT
GTTTCAAAAT CTATTGAGAA ACTATCTCAA GAATACGAGA AAGTTCAAAA ATTTGTTCAT
AAGCCGCTTG CATCATTCTA TGTGACAATG GATTCTTCAA ATAAGGAGAT TAAATTAGGA
GTGGAAGAGC AAAGTATGCA GCAATTATTG GATGATTTTT CTTCCAAAGT CTCAGAATTG
CTTCAGTAA
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| Protein sequence | MNSRLFLDIQ AIQSVPPCNI NRDDAGSPKT AQYGGVTRAR VSSQCWKHSM REYFKEHSGD
SNVGMRSKNI VKYVADKIIT LKPELSEQEA LDLANKTLNN AGFKTKTDKG KIIPVVNVLF
FLGENQANSL AQAAINNVTD KKQLEEILKD NPPIDIALFG RMLADNPSLN EDASSQVAHA
ISTHAVRAEF DYYTAVDDLS VDDNAGAGML GTIEYNSSTL YRYANVAIHE FSHQLSDNKE
STINALKLFI EAFANAMPTG KVNTFANQTL PQMLVVTLRE DRPVNLVSAF EDPVKAKDGY
VSKSIEKLSQ EYEKVQKFVH KPLASFYVTM DSSNKEIKLG VEEQSMQQLL DDFSSKVSEL
LQ
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