| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0760 |
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| Symbol | casA |
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| ID | 8709410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 862934 |
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| End bp | 864604 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 646482862 |
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| Product | CRISPR system CASCADE complex protein CasA |
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| Protein accession | YP_003373984 |
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| Protein GI | 283783230 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0334414 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAGAT TTAATTTATT AGATGAGCCT TGGATTTCCG TCATTGTAGA CGAAAAAGGC
CACAATAAGC TCGTATCAAT TACAGATGTG TTTAAGCATG CATCAGAATA TAAAGCTCTT
GCGGGAGATA TGAAAACTCA AGATTTTGCA TTACTTCGTA TTCTTCTAGC TGTACTTCAT
ACTGTTTTTT CTAGGTACGA TATTCAAGGA AATTCTCGTG AATTTGATTC AAATGAAGAT
AATGAATATT ATTTCAATAA AGAAACAATG AATATTTGGC GCGAAGTTTG GAATTCAAAA
GAGTTTCCAG ACGCAGTTTT CAAATATTTA GAACAATGGC ATGATCGTTT TTACCTTTTT
GATGACAAAT ATCCATTTTT ACAAGTACTT AAACAAGATA TCGATAGTAA AAAGCTTGGT
GGTAAATCTC CTAGTGAGAT ATCTGGTAAA AATATAAATC GATTGATTTC TGAAAGTAAC
AATAAAGTAG CTGTATTTTC TCCAAAAGAT AATGTTGATA ATAACAAATC GTCACTTAAT
GAAGCGCAAT TAGCAAGATG GATTATTACG TTACAGTCAT ACGCTGGATT GGCGGATAAG
ACCTTTTTTG GTACGGGAAA ATATAAAGCT TCTAAAGGGT GGCTTTTTGA TCTTGGTGGC
ATTTACGTAG AAGGCGAAAA CCTATTTGAA ACTCTTATGC TCAACTGCGT GCTTGTTGGT
GAAATGCAAT CTCCTGAGAA GAGACAAAAA CCGTGTTGGG AGTATTCTGG AGCGGAAAAT
ATTGAAAATT CGTTTTATGA AACATTTATT GACAATATTT CTCAGCTTTA CACTAGATGG
AGTAGAGCAA TATATATAAA TCCTGATATT AGCATTGAAA ATCCAATATC GGTTTCTATA
GTGAAACTTC CTGATATTAA TCATAAAGAT GCTTTTATTG AGCCAATGAC AGTATGGCAG
TACAACAAGG AACGGGAAAA CAAGGACAAA TACACTCCAA GGAAGCATAA AGTAGAAGAA
TCTATGTGGA GATCATTTGG GTTACTTACA TTGCAAGAAT CAGATGATGG AATCCTAAAA
AATCACAAAC CTGGAATTAT GGAATGGTTA AACAAAATTA GTAAAGATAT TGAAGGTTCT
TCTATTTCAT TACAGGCTGT GAGTATGAAA GATGATGGTA ATGCTACATC TTGGGTTCCT
ACAGATGAAA TATGCGATAC TCTGCATATT GATGAAGTTG TAGTAACTGA TAATTCTGAC
AATGGATGGG TGGGCAGAAT TAACAATGAA GTCGAGTATA CAAGATCTGC CATAGGATTT
ATTTACAGGC AATTTCTTCT AGACATATGT GAAATACGTA ATAGAAATAA AGATGATGCA
ACTAAATATG CTGATAAGTG TATTAGTCAT GTTTATTTCT TAGTCGATCA ACCGTTTAGG
CAATGGTTAG CAAATATTAA ACCAAAAGAT TCAATGAATG AGCGTTGTGC TCAATGGAGA
AATACTTTGC ATAATATACT CATCAATGAA GCAAAAGGCA TGTTGGAAAA TGCTACATTG
CGCGATTTTA CAGGTAGGCC TGTTGTGCAA AGTGAGAAAG AATCTACAAA AAATATAGTT
ACAGCTTACA GCATTTTTAC TAGTCGATTA AAAAAATTAT CAAAAAAATA A
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| Protein sequence | MSRFNLLDEP WISVIVDEKG HNKLVSITDV FKHASEYKAL AGDMKTQDFA LLRILLAVLH
TVFSRYDIQG NSREFDSNED NEYYFNKETM NIWREVWNSK EFPDAVFKYL EQWHDRFYLF
DDKYPFLQVL KQDIDSKKLG GKSPSEISGK NINRLISESN NKVAVFSPKD NVDNNKSSLN
EAQLARWIIT LQSYAGLADK TFFGTGKYKA SKGWLFDLGG IYVEGENLFE TLMLNCVLVG
EMQSPEKRQK PCWEYSGAEN IENSFYETFI DNISQLYTRW SRAIYINPDI SIENPISVSI
VKLPDINHKD AFIEPMTVWQ YNKERENKDK YTPRKHKVEE SMWRSFGLLT LQESDDGILK
NHKPGIMEWL NKISKDIEGS SISLQAVSMK DDGNATSWVP TDEICDTLHI DEVVVTDNSD
NGWVGRINNE VEYTRSAIGF IYRQFLLDIC EIRNRNKDDA TKYADKCISH VYFLVDQPFR
QWLANIKPKD SMNERCAQWR NTLHNILINE AKGMLENATL RDFTGRPVVQ SEKESTKNIV
TAYSIFTSRL KKLSKK
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