Gene HMPREF0424_0748 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0748 
Symbol 
ID8708880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp844709 
End bp845467 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content39% 
IMG OID646482853 
Producthypothetical protein 
Protein accessionYP_003373975 
Protein GI283783221 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000117718 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGGATATT CAGTTACACA ACGCATTAAG AGCATTAAAC AACCTTATGG TGGATATTTG 
CCACGAAAAG AATTTGTTGA AGAATCATTA GGCGAAGGAA TAGAAGACTT ATACGATAAA
GAGAACATTC ACCCAAGTTT AGTTGGTATA GTAGTTGACT ACATGACTCG TTTAATGTCT
GGATCGAGTG CAATAGACGC GTTTAAAATT TCCTTATTGG GCGCAATGAT TATAAACGAA
CACGATAATG CATCGAAACT TATGTCTGGC ATTAAAGGAC TTGGCGATGA AGATATAGTT
AACGCCGTCA AACTTGTTGG ATTCGACGTA TGCTTTAGAT ATGGTCCTAT TGGCTACAGG
CCTTTTGACG AAATCAATCC CGATGAGCAC ACAATCCAGA ACATCAGAGT TATGGTTCAG
CGCTCGCTTC ATTTTCTTGA GTGTTATGGC CCGAAGGTGC TTGACGGTTT TACGCTAGAG
GGCGGTTACA CCGATACGGT AAGTGCTGGC GATGGTGATT TTATAACAGC AGATACTTTG
TGGGATTTTA AAGTTTCTAA AGAAAAGCTG GATAAGGATC AGACTCTTCA ACTGCTTATG
TATTGGCGTA TGGGTTTGCG TTCTATTCAT CCAGAGTTTC AGAATATTAA GTACTTGGGT
ATTTATAATC CGCGCATGAA TAAGGTTTAT CGAATTGCTG TTGAAAACAT ATCCGAGGAA
GTTATACGCG AAGTTGAGAA AGATGTGATT GGATATTAG
 
Protein sequence
MGYSVTQRIK SIKQPYGGYL PRKEFVEESL GEGIEDLYDK ENIHPSLVGI VVDYMTRLMS 
GSSAIDAFKI SLLGAMIINE HDNASKLMSG IKGLGDEDIV NAVKLVGFDV CFRYGPIGYR
PFDEINPDEH TIQNIRVMVQ RSLHFLECYG PKVLDGFTLE GGYTDTVSAG DGDFITADTL
WDFKVSKEKL DKDQTLQLLM YWRMGLRSIH PEFQNIKYLG IYNPRMNKVY RIAVENISEE
VIREVEKDVI GY