| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0724 |
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| Symbol | clpC |
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| ID | 8709881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 820852 |
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| End bp | 823440 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482829 |
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| Product | negative regulator of genetic competence ClpC/MecB |
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| Protein accession | YP_003373951 |
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| Protein GI | 283783197 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0978513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAAC GGTTCACTGA TCGCGCACGA CGCGTGATTG TGCTAGCTCA GGAAGAGGCT
CGCTCACTTC AGCACAATTA TATTGGTACT GAGCATATTT TGCTCGGGCT TATTCGCGAA
GGTGAGGGCA TTGCCGCGAA AGCGTTAAGC TCAAAAGGCG TAGGCCTAGA AGGCACTCGC
AAACAGGTTG AAGAGATGAT CGGCAAAGGC ACTGTTTCGC CTGCTGGTCA TATTCCTTTT
ACGCCTCACG CTAAGCAAGT GCTTGAACTG AGTTTGCGCG AAGCTCTTCA GCTTGGTCAC
AGTTATATTG GTACTGAGCA TATTTTGCTA GGGCTTATAC GCGAAGGCGA AGGTGTGGGC
ACGCAAGTAC TTATAAAGAT GGAAGTTGAT CTTGGAGACT TGCGAAGCAC TACTGTTGAT
TTAATTCGTG GAGATAATGC TCCTAATGGT AGCGAGAAGG GCGAGTTAGC TAATGCTGGA
AGTGTGCAAG ATAAGCGAAA TCAATCCGGC TCTGCTCTTC TTGATCAATT TGGACGCAAT
TTAACATTTG AAGCTCAAGA AGGAAAGCTT GATCCTGTTA TAGGTCGTTC TGAAGAAATT
GAACGCGTTA TGGTTGTACT TAGCCGACGC ACGAAGAATA ATCCTGTGCT TATTGGAGAG
CCTGGAGTTG GTAAGACTGC AGTTGTAGAA GGTCTCGCAC AGAAAATCGT TGAAGGCGAT
GTGCCGGAAA CGTTAAAAAA TAAGCAAGTT TATTCTCTAG ACTTAGGTTC AATGATTGCA
GGATCTCGCT ACCGTGGCGA TTTCGAAGAG CGCTTGAAAA AAGTGCTTAA AGAAATTAAA
ACACGCGGCG ATATTGTGCT TTTTATTGAT GAGATTCACA CTATTGTTGG AGCAGGTTCT
GCTGATGGAG CTCTTGGTGC ATCCGATATG CTTAAACCAA TGCTTGCGCG TGGAGAGCTA
CAGACAATTG GTGCTACTAC TACTGACGAG TATCGCAAGT ATATTGAAAA AGATGCTGCT
TTGGAGCGTC GTTTCCAGCC GATTCAAGTT CCAGAACCTA CAATTGCTGA AACTATCGAG
ATTCTTAAAG GATTGCGTTC TCGCTACGAA AATCACCATC ATGTAACTAT TACCGATGGA
GCTTTACAGT CTTCTGCTGA GCTTTCTGAT CGTTACATTC AAGATCGTCA CCTTCCAGAT
AAGGCTATTG ATCTTATTGA TGAAGCTGGT GCGCGCTTGC GTATTAAGCG CTTGACTCAG
CCGCCTGAGC TCAAAGAATT AAACCATAAG ATTGCTAAGA TTTCCGAAAA GAAAGATGAA
GCAATCAAGC AGCAAGATTT TGAAGAAGCT GCCAATCTTC GCGACGATCA AGAAAAGCTT
GAGAATGAAG CTGCAGAGAA GGAAAAGGCT TGGCGCGAAG GCGAGTCTAA CGTCAAGATG
GTTGTTGATG AAGACATGAT TGCTTCCGTT GTTTCGAGCA CTACAGGCAT TCCTGTAGTA
AAGCTTACTC AAGCGGAATC ACAGAAGCTT CTTCAAATGG AATCTGAACT TCACAAGCGT
ATTGTTGGTC AAGATGAAGC TGTGTCTGCT TTAGCTCGCT CGATTCGTCG TGCTCGAGTT
GGTTTGAAGG ATCCTAAACG TCCTTCTGGA TCGTTTATTT TTGCTGGTCC TACTGGAGTT
GGTAAAACTG AGCTTGCCAA GGCGCTTGCA AACTTCTTGT TTGATGACGA TAATGCCTTA
ATCAGAGTTG ACATGTCAGA GTTTGCAGAA AAGTATGCTG CGTCTAGGCT TTTCGGTGCT
CCTCCTGGAT ATGTTGGATA TGAAGAAGGT GGCGAGCTTA CTGAAAAAGT TCGCAGAAAG
CCATTCTCTG TGGTGCTTTT CGACGAGATT GAAAAAGCTC ATCCAGATAT TTTCAACACG
CTTTTGCAAG TACTCGATGA CGGTCACTTA ACAGACGGTC AGGGTAGAAA AGTGGACTTT
AAGAATACGA TTATTATTCT TACCACCAAT CTTGGTACTC GCGATATTGC GAAGGCTGCA
AATACTGGCT TTACACTTGG AAATAACGCT GATTCCACGT ATCAGCGCAT GAAAGATCAG
GTTAATTCTG AGCTTAAGCG TCATTTCCGT CCAGAGTTCT TAAACCGTTT GGACGACACT
ATTGTGTTCC GTCAGCTTAC GGAGCCAGAA GTTCGTCAAA TTGTTGACAT GGACGTGAAG
TTGCTTAACG ACAGGCTGTT TGATCGTCAC ATGTCTCTAG AAATTACGGA TGCCGCTAAG
AATTTGCTTG CACAGAAAGG CTTCGATCCT TTGCTTGGTG CACGTCCGTT GCGTCGCGTA
ATTCAGCGAG ATATTGAGGA TACTATTTCT GAAAAGATTT TGCTTGGTGA ACTTTCTGAC
GGCGAACACA TTAAGGTGGA TGCTGAAGGC GAAGGATTGC TGGGGGAGTT CACAATTAAA
GGCGAAAAGT TTGAGACAAT AGACACAACT GCTGCTGTTG CTACTGAAGA AAATAAGTCT
GAAGAAAATA AATCTGAGGA TAATAAGTCT GAAGATAGCG AAAAAGAAGA TAGCAATAAG
AATAAGTAA
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| Protein sequence | MFERFTDRAR RVIVLAQEEA RSLQHNYIGT EHILLGLIRE GEGIAAKALS SKGVGLEGTR
KQVEEMIGKG TVSPAGHIPF TPHAKQVLEL SLREALQLGH SYIGTEHILL GLIREGEGVG
TQVLIKMEVD LGDLRSTTVD LIRGDNAPNG SEKGELANAG SVQDKRNQSG SALLDQFGRN
LTFEAQEGKL DPVIGRSEEI ERVMVVLSRR TKNNPVLIGE PGVGKTAVVE GLAQKIVEGD
VPETLKNKQV YSLDLGSMIA GSRYRGDFEE RLKKVLKEIK TRGDIVLFID EIHTIVGAGS
ADGALGASDM LKPMLARGEL QTIGATTTDE YRKYIEKDAA LERRFQPIQV PEPTIAETIE
ILKGLRSRYE NHHHVTITDG ALQSSAELSD RYIQDRHLPD KAIDLIDEAG ARLRIKRLTQ
PPELKELNHK IAKISEKKDE AIKQQDFEEA ANLRDDQEKL ENEAAEKEKA WREGESNVKM
VVDEDMIASV VSSTTGIPVV KLTQAESQKL LQMESELHKR IVGQDEAVSA LARSIRRARV
GLKDPKRPSG SFIFAGPTGV GKTELAKALA NFLFDDDNAL IRVDMSEFAE KYAASRLFGA
PPGYVGYEEG GELTEKVRRK PFSVVLFDEI EKAHPDIFNT LLQVLDDGHL TDGQGRKVDF
KNTIIILTTN LGTRDIAKAA NTGFTLGNNA DSTYQRMKDQ VNSELKRHFR PEFLNRLDDT
IVFRQLTEPE VRQIVDMDVK LLNDRLFDRH MSLEITDAAK NLLAQKGFDP LLGARPLRRV
IQRDIEDTIS EKILLGELSD GEHIKVDAEG EGLLGEFTIK GEKFETIDTT AAVATEENKS
EENKSEDNKS EDSEKEDSNK NK
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