Gene HMPREF0424_0716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0716 
Symbol 
ID8709137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp812094 
End bp812762 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content42% 
IMG OID646482821 
Producthypothetical protein 
Protein accessionYP_003373943 
Protein GI283783189 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.800292 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGAA ATAATCAGAA CGTGTCGTAT ACGCCTGATG CTTTTGATGA GCCACCAGAG 
GGACCGATTG GAGTTCATCG TGGAAATCCT GCGTGGTATG CCGTAATACT TCCTTATTTT 
GTTGCATTAA TTGTTGCAGC GGTTGTTGGT GTTTTGGTTT GGGCTATCGC TTCTGGCGAA 
ATCTCACATC TTCCGTTGCC TTGGAATCAT CAGCAACAAT CATCTCAATC AGCATCGCCT 
TCTAAGACTT CTGAAAACAA AAAGTCGGTT AAAAGCGACG AAGATAAATC TTCTGAAGGC 
GGAGATGACG ACGATAATAA ATCTGAAGAA AATAAATCAG ATAGGAAAGA TGCTGGTGAC 
TCTAAGGATA ATTCAGCAAA TGATTCTAAG ACGCAAACTT CACTAGATAA ATCAGTTGCT 
GTGAAAGTTC TTAACGCAAC CAAGATAAGC GGTCATGCTG CTGCTGGAGC AGATAAGTTA 
AAGCAAGCGG GATACGCAAA TGTGACAGCT GGGAATCCAA CTGGTAAAGT CCCAGGCGAG 
TCTGTTGTTT GGTATAAAGA CGATTCACAA AAAGCTGCAG CTGAAGATAT TGCAAAGACT 
TTAGGTATTA GTGCTGTCGA AAATGAAAAA CAAATCGTTT CTCCGATTGT AGTTGTGCTT 
TGCAAGTAA
 
Protein sequence
MARNNQNVSY TPDAFDEPPE GPIGVHRGNP AWYAVILPYF VALIVAAVVG VLVWAIASGE 
ISHLPLPWNH QQQSSQSASP SKTSENKKSV KSDEDKSSEG GDDDDNKSEE NKSDRKDAGD 
SKDNSANDSK TQTSLDKSVA VKVLNATKIS GHAAAGADKL KQAGYANVTA GNPTGKVPGE 
SVVWYKDDSQ KAAAEDIAKT LGISAVENEK QIVSPIVVVL CK