| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0708 |
|---|
| Symbol | |
|---|
| ID | 8709713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 803825 |
|---|
| End bp | 805432 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 646482813 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003373935 |
|---|
| Protein GI | 283783181 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.221835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTGGA AAGTTAAGTC CTCTGTTGTA GGTGGAATGA CGCTTAGCGT TGCTGATAGA
GAAGCGTATA TTAGTTTTTC CAGAAAACTC AATAATATTG CTAAAGAATT ACTTACGCTA
AAAAATTTAT GGCTTAATGC AGCGATGGTT ATTGCCGGTC AAAATTATGG TATACAAAAA
GAATCAGGAG CATATATTCA TGATTCTTCG CAATCATTTT TAACTGAAAG CATATGTCAT
GAATATGCTC ATAAATGTTA TTTAATGTCT CAAAATTTAG AAAATCTTGC TTTTCTTATT
GCAAGAGCAA ATAATTTGTA TGAAGATGCA GAATTTCGTG CAAAAGACGA GTTAGACAAT
AAAATTTCTT TCTTGGCTCT TGCAAACCCT ATTTTTGCTT TACATGTTTT ATTGTCCGCA
GGTTTCGCCG TTAATCAAGA TAATAAAAAT CATTCAGGTT TCCAAAATCT TGCTAGATGG
TCCTACACAA CTAAGAATAT ACAACAAGGA ATTATTCGAG GTTTATCGCA GCACCTTATT
TTAAATCCTA TTACAAGTTT GCCAATATTT ATTGCCGGAA ATGCGAAAGG CCCCATAAAT
AAAAAAGAGC GTGAAACCTC ACTAAACTTT TTATCCAATG CTCAAAAATA TTTATCACAA
GCTATTCCAT TTATTTCTAG TGCTCTTAGC TTCGTAAGCG CGCCTATTAA TGATCGAAAG
CAAGGTAATA ATTTACTTCT CACTAAAGTA AATGAGACGT GGAGAAAACC TGGATCTGTT
CTTGCTAGAC CTGGACGTAA TCTGCTTGAA ACTTTAGAAA ATTTAACGGA ACTTGGAAGC
GAAAATTTGG GCGTTAGACC ACCACTTGTT AATCCAGATG CTGCTACTAT TGCAATTCAA
CGTTTTAAGC GCAGCGATGG CAGTTCGTCA TGGTTAGTAA TAATTCCAGG CACTGACGGT
AAAGCACACT CTCCTTTTGG TTGGGCACAA AACACAGAAG TAATGAGTCA TAGTTCTTTA
GTTAGAAAAC AAGCTGATAG CACTCGAATG GTTGTAGAAG CTATGAAACG TTCTGGAATT
AAACCTAACG AGCCTGTTGC TTTAGTAGGA CATTCTCAGG GAGGCATTGT TGCAGCAAGC
ATTGCAAGCG ATTACTCTAA ACAGTACAAC ATACAGCATG TTGTTACTGC TGGATCTCCT
ATTGCAAATC ATCCAATTCC TAAGAAAACT TGGGTTACTA GTATTGAGAT GGACGATGAG
ATTGTGCCTT CTTTAGATGG CAAAGAGAAT CCTCGTAGAA ATAATTGGGT GACTATTCAT
GGACATGCAA TTCATGTTAA AGAATCTAAG CGTTCTTTAC CTCCTGGAGT CACGCGTTTT
TCTGGCAAAC AATATTCGAC TAAAAAATTC AATAATGACG GAATATTCGT TAATGACGTT
CCAGAAGAAA GAACTTTAAC TCATGATTTG CATTACCATA CTGCAGCTTA TGAAGATGCT
CTTCAACTCG GATCTAAAAG TGTGCGCGAG CAAGATCGAC ATTTTCAGAA TACTATTAAT
GGCAAATTGC AAAGTACTAC ATTGTGGCAA GGAGTAATGA AAAAATAA
|
|---|
| Protein sequence | MSWKVKSSVV GGMTLSVADR EAYISFSRKL NNIAKELLTL KNLWLNAAMV IAGQNYGIQK
ESGAYIHDSS QSFLTESICH EYAHKCYLMS QNLENLAFLI ARANNLYEDA EFRAKDELDN
KISFLALANP IFALHVLLSA GFAVNQDNKN HSGFQNLARW SYTTKNIQQG IIRGLSQHLI
LNPITSLPIF IAGNAKGPIN KKERETSLNF LSNAQKYLSQ AIPFISSALS FVSAPINDRK
QGNNLLLTKV NETWRKPGSV LARPGRNLLE TLENLTELGS ENLGVRPPLV NPDAATIAIQ
RFKRSDGSSS WLVIIPGTDG KAHSPFGWAQ NTEVMSHSSL VRKQADSTRM VVEAMKRSGI
KPNEPVALVG HSQGGIVAAS IASDYSKQYN IQHVVTAGSP IANHPIPKKT WVTSIEMDDE
IVPSLDGKEN PRRNNWVTIH GHAIHVKESK RSLPPGVTRF SGKQYSTKKF NNDGIFVNDV
PEERTLTHDL HYHTAAYEDA LQLGSKSVRE QDRHFQNTIN GKLQSTTLWQ GVMKK
|
|---|
| |