Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0706 |
Symbol | |
ID | 8708842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 799869 |
End bp | 802304 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646482811 |
Product | hypothetical protein |
Protein accession | YP_003373933 |
Protein GI | 283783179 |
COG category | [S] Function unknown |
COG ID | [COG0392] Predicted integral membrane protein |
TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.778922 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATCTA GCATAAATCC AAATCTTGTT ATTGAAGATA CTCAGCCTAG CTTAGTACGT AGTTGGGCTG ATTTGTTGTA TGCAATATCA TCAGTTGTAA TTGGCGTTTT TACTTTGTTG TCGTCAATGT GTTTATCAGC AACGGCTGAT GCTATGAAGA TTGATGCACG AAGTGCTACT CAAATTATAG GATTATCTTT TAATAATCTT TCATTTGTTC TGATACAGCA AGGTCTTACT CTTATTGTTG TTGCAGAAGT TATTGCACAC ATGGTTTCTG ACAGGCGTTG GATTGATACC GCTATTTCTG TTATTACGCT GTTTATAAGT TATGGTTCAG TATGGCTGTT ATCTATTGCG ATATTTTCTA CACACAATAT AGCTTTGATT GAATCTTTAC AAATGCGGTC TAATAACACT TGGGCTGATT TGCTTCCAGA CATGTATGCT GTTCTGGTTG CTTTTCTTAC AGTTAGTGGT CCTAGACGCG AATATAAGCA TGTAATGTGG GGCTGGAATG CTTTATTCAT TGTTACAGCA ATACTTCTAT TTTCATCTTG GGATTCCTAC TCTGCTATTC TTGTATCATG TTGCTTAGGA AGAGCAATTG GTACGCTTAT TCGTTTCGCA AAAGGCACAC GCAGTAAGGG TGCTTGGGGT GACGATATTG TTCTTGCTTT AAAAAATATT GGCATAGATA ATCTTACTCA ATTAACTCGT AGAACTCAGC AAGCTGATCA TACTGGAGTT CTTCGTTCAA GTCTTGATGA CGATTTAATT GAAAATTCAA GATTGTATGA TGCAACAGAC ATCCACGGCA TACGTTATGT AATTTCAGTA TTAGATAATC AAGTTCATTT ACCAGGTTAT TTAAATCAAT TATGGCAGTG GGTGCGTTTA GTAGATATAC CAACTCGTAG AGATCGTTCT GCTAGACATT CTGTTCATCA CCACCTTTCT ATGCTTCTTG TTTTACGAAA TATGCATTTG CCAACAGCGA ATGTTTATGG AGTAAGCGAC AGTGATAAAT CTTCAATAAT GGTTTTTCAC GCTTCTAACG CTCTACTGCC TTGCAATTTG AACACTTTAA CTATTGATGA TGCAGCAAAA TTAATGCGTT ATGTAGATGC TGCTAACACT CGCGGTATTA CGCATAGACG CATCACTCCT GAAACTATTG CTAGGCTTGA AGACGGAACA CCAGTTATTG CAGGTTGGCA AAACGGCGAC GTTGCCAGCG ATGATACAAA TATTGCACTT GATAAAGTTC AGCTTTTAAC GCTTATTGCA TCTTGCACAG ATATTGACAC TGCTCTTAAA GCTGCTATTA ACACATGGGG TGCAGAAAAG TTATCTGCAC TATTGCCTTT TATGCAGAAA GCTGCTATTC CTGCTTCCAC GAGATCTTTG CCATCTTGGA ATAAAAAAGT TTTCCAAAAT CTTTGCAATA AGTTAAGTCA AATAGTTGCT TTACACACAG ATGAAGAAGA TTATGATACT GTGCGTTTAG CGCGCTTCAA TATACGTTTC TTTGTTAGCT TGGTTCTTTC GATTGTTGCT GTCGCTGTTA TTACTACACA GTGGCATCCT CAGGAAGTAT TTGCTGCCTT GCGTCACGCA GATAATGTAA TGGTATTTAT GTGCTTTGCT TGCAGCATGT TTGCTTGGAT TGGATCTGCA ATTACTCTCG GCTCATTCAT GGATGATCAA AAACCTTCTG CACATGTTTT GTTTGCATCT CAAGCAGCTA CTGGTTTCAC AGCAGTTTCT ATGCCTGCTG GTGTTGGTCC TGCATTTGTA AATATGCAAT TATTAAAGAA AAGCGGGTAC ACTTCAGCTC AAGCTACAGC AATTACTAGT GCAGTATGGC TTATTCAAGC ATTAATGACA ACTTTAGTAT TACTTTCTAT AGGCGTTTTC ACTGGTAAAA ATGTGCTTTC TGGAATGATT CCTACTCATA TGCTCATTAC TTTCATTGGA ATAATCACAC TTATAGTTTG TGTTTTAATG GTTATTCCGT CCGCTCGTAA AGCAATTCGA AAGCATTATT TGCCAATATT ATCTGATTAC GGCCATCAAA TTAAGGAACT TATTTCACAT CCTATGCAAC TTATTGCAGG CTCTTTTGGT GCTATTGTGC TTGTTTCATG CATTGGATTG GGTTATTGGA TTTCTTTGCT TGCATTTGGA TATTACGCAA ATCCTTGGGA AACAATCTTA CTATTCTTAC TTGCTAACGC TGCTGGATCG GCAGTGCCTA CGCCAGGCGG CTTGGGTGCT GTTGAAGCTT CTCTTACTTT CGCATTTACA TCTGTAGGTG TTCCTCCAAC AGTTGCTTTG TCTGCCACTC TTCTGTATAG GCTTATGTTC TACTGGTTGA GAATTCCGTT AGGCGCGTTT GCAATGAAGT GGCTCAGCAA TAATGAGCTT ATATAA
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Protein sequence | MQSSINPNLV IEDTQPSLVR SWADLLYAIS SVVIGVFTLL SSMCLSATAD AMKIDARSAT QIIGLSFNNL SFVLIQQGLT LIVVAEVIAH MVSDRRWIDT AISVITLFIS YGSVWLLSIA IFSTHNIALI ESLQMRSNNT WADLLPDMYA VLVAFLTVSG PRREYKHVMW GWNALFIVTA ILLFSSWDSY SAILVSCCLG RAIGTLIRFA KGTRSKGAWG DDIVLALKNI GIDNLTQLTR RTQQADHTGV LRSSLDDDLI ENSRLYDATD IHGIRYVISV LDNQVHLPGY LNQLWQWVRL VDIPTRRDRS ARHSVHHHLS MLLVLRNMHL PTANVYGVSD SDKSSIMVFH ASNALLPCNL NTLTIDDAAK LMRYVDAANT RGITHRRITP ETIARLEDGT PVIAGWQNGD VASDDTNIAL DKVQLLTLIA SCTDIDTALK AAINTWGAEK LSALLPFMQK AAIPASTRSL PSWNKKVFQN LCNKLSQIVA LHTDEEDYDT VRLARFNIRF FVSLVLSIVA VAVITTQWHP QEVFAALRHA DNVMVFMCFA CSMFAWIGSA ITLGSFMDDQ KPSAHVLFAS QAATGFTAVS MPAGVGPAFV NMQLLKKSGY TSAQATAITS AVWLIQALMT TLVLLSIGVF TGKNVLSGMI PTHMLITFIG IITLIVCVLM VIPSARKAIR KHYLPILSDY GHQIKELISH PMQLIAGSFG AIVLVSCIGL GYWISLLAFG YYANPWETIL LFLLANAAGS AVPTPGGLGA VEASLTFAFT SVGVPPTVAL SATLLYRLMF YWLRIPLGAF AMKWLSNNEL I
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