| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0704 |
|---|
| Symbol | relA |
|---|
| ID | 8709982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 796941 |
|---|
| End bp | 799292 |
|---|
| Gene Length | 2352 bp |
|---|
| Protein Length | 783 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 646482809 |
|---|
| Product | GTP diphosphokinase |
|---|
| Protein accession | YP_003373931 |
|---|
| Protein GI | 283783177 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGAAC TTCAAGAGGA TGTAAAAGGA TCCAATAGGC TCGGATGTGA AATCAGCGAA
GATTCTCAAA ATCCATTATT GCCAATATTG AGCATGTGCA AATGGCATCA TCCTAATGAG
GATATGAGCA TTCTTCATAG AGCTTATGAT CGTGCTGTAA AGCAGCATAC AGGTCAAAGA
CGCAAATCTG GTGAGCCATA CATTATTCAT CCTCTTGCTG TAGCTCAAAT TCTTGCAGAT
CTTGGAATGG GACCAATTGT TGTTGCTTCA GGATTATTAC ACGACACTGT AGAAGATACA
GATTACACGC TAGAAGAATG TCGAGCTGAA TTTGGCGATA CTGTAGCAGG TCTTGTAGAT
GGTGTTACAA AAATATCCAA CATGGAATAT GGCGAAAGTG CTCAAGCAGA AACTATTCGT
AAGATGGTTG TTGCAATGAG CCGCGATGTG CGAGTGCTTG TAGTAAAGCT TGCGGATCGT
TTGCATAATG CTCGTACTTG GAGGTATGTT AAGCCATCAA GTTCACATAA AAAAGCAAGA
GAAACTCTTG ACGTATATGC GCCTCTTGCT AACCGTTTAG GCATGAATGC AATTAAAACT
GAACTTGAAG AGCTGAGTTT TAAAGTATTG TATCCAAAAA TTTATAATGA AATTGTTGTT
TTAGTTGCTC GTAGAGCAGG TCAGCGTGAA GTTTATTTAC GACAAATTCT TGAAGAAATT
AATGCAGATC TTGCAGAACA ACATGTTAAA GCATCGGTAA AAGGTCGACC AAAAGATTAT
TTCTCTATTT ACCAAAAGAT GATCGTTCGA GGTCATGATT TTGCTAATAT TTACGATTTA
GTTGGTGTGA GAATAATAGT CGATTCTATT CGTGACTGTT ATGCAGCATT AGGTGCAGTG
CATGCTCGAT GGAGCCCTGT TCCAGGACGT TTTAAGGATT ACATTGCAAC TCCAAAGTTG
AATATGTATC AAAGCTTGCA TACTACAGTT GTAGGCCCTG GTGGAAAGCC AGTAGAGATT
CAAATACGCA CATGGGATAT GCATAGGCGT GCTGAATTCG GCATCGCAGC TCATTGGAAG
TACAAAGCTA ATGGTCAGGC TGGTCGCGCT TTAAGTAAGC CTGATAATGA TGATTTAAAA
CGCGAAAATA ATATTGATGA CAAAAAAGAG CTTAGCGAAG CAGATAATCT TAAGTGGATT
CAACAGCTTG CTGATTGGAC TAGTGAGACT CCAGATTCAG ATGAATTCTT AGGTTCATTA
AAACAAGATC TTGGTGCTTC TGAAGTTTAT GTTTTTACTC CAAAGGGGAG TATTGTTGCG
CTTCCGCAGG ATGCAACTCC TGTTGATTTT GCATATTCTG TGCATACTGA AGTTGGTCAC
CGCATGATGG GTGCGCGTGT AAATGGACGC TTGGTTCCTC TTGATACGAA ACTTTCAAAC
GGTGACACTG TAGAGGTGCT TACTTCAAAG TCGGATACAG CTGGACCATC TCGCGATTGG
CTGAGTTTTG TAAAATCTCC TCGTGCTCGA AATAAAATAC GTCAATGGTT TAGCAAGGAA
CGCCGCTCTG AGGCGATTGA AGAGGGCAAG GATGAGCTAA CTCGCGCTAT GCGTAAACGT
AACTTGCCTT TAACTACTTT GATGACGCAG CAGGCATTAA TTGGCGTTGC TGATGAATTG
AATTTGCCTA CTAATGTTGA GTCTTTATAT GCGGCTATTG GCGAAGGTCA AGTTTCTACA
CAGAATGTTA TTTCGCGTTT AGTAAAAGAT GCGGGCGCTG ATGAAGTTGC AGAAGAAGTA
GAACAAGAAG CATTGCCTTT ACGCCATGTT GAGCGCAGCC ATAAGTCTAA CGGTGCTTTG
GGAGTATCAG TTAAGGGTGT TGGAGACGTT TGGGTCAAGC TTGCAAAATG TTGCATGCCA
GTTCCAGGAG ATATGATTAT TGGTTTTATA ACACGAAACC AAGGTGTGTC TGTGCATAGG
ACTGACTGCC AGAACATGCT CGATTTGCAA AAAACTCAAT CAGAGCGCGT TATTCCTGTT
CAATGGACTA GCGATAAAGG CTTGTTCTTG GTTAAGGTCC AAGTTGAAGC ATTGGATCGA
CAACATCTTC TTTCGGATGT TACTCGCGTT CTTTCAGATC ATGGAGTAAA TATTCTTTCC
GGAACTATTG CTACAGGCGA TGACCGTGTT GCAACAAGTC AATTTACCTT TGAAATGGCA
GATCCTCAGC ACTTAGCAAC TCTACTTGCT GCTATCCGTA AAATTGAAGG CGTTTTTGAC
GTTTACCGCA TTACGGGAGC AAAAGATAGC GCAGAGCCGC GTTTGCGAAA AATGGAACGA
GGAAATCTAT AA
|
|---|
| Protein sequence | MGELQEDVKG SNRLGCEISE DSQNPLLPIL SMCKWHHPNE DMSILHRAYD RAVKQHTGQR
RKSGEPYIIH PLAVAQILAD LGMGPIVVAS GLLHDTVEDT DYTLEECRAE FGDTVAGLVD
GVTKISNMEY GESAQAETIR KMVVAMSRDV RVLVVKLADR LHNARTWRYV KPSSSHKKAR
ETLDVYAPLA NRLGMNAIKT ELEELSFKVL YPKIYNEIVV LVARRAGQRE VYLRQILEEI
NADLAEQHVK ASVKGRPKDY FSIYQKMIVR GHDFANIYDL VGVRIIVDSI RDCYAALGAV
HARWSPVPGR FKDYIATPKL NMYQSLHTTV VGPGGKPVEI QIRTWDMHRR AEFGIAAHWK
YKANGQAGRA LSKPDNDDLK RENNIDDKKE LSEADNLKWI QQLADWTSET PDSDEFLGSL
KQDLGASEVY VFTPKGSIVA LPQDATPVDF AYSVHTEVGH RMMGARVNGR LVPLDTKLSN
GDTVEVLTSK SDTAGPSRDW LSFVKSPRAR NKIRQWFSKE RRSEAIEEGK DELTRAMRKR
NLPLTTLMTQ QALIGVADEL NLPTNVESLY AAIGEGQVST QNVISRLVKD AGADEVAEEV
EQEALPLRHV ERSHKSNGAL GVSVKGVGDV WVKLAKCCMP VPGDMIIGFI TRNQGVSVHR
TDCQNMLDLQ KTQSERVIPV QWTSDKGLFL VKVQVEALDR QHLLSDVTRV LSDHGVNILS
GTIATGDDRV ATSQFTFEMA DPQHLATLLA AIRKIEGVFD VYRITGAKDS AEPRLRKMER
GNL
|
|---|
| |