| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0700 |
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| Symbol | |
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| ID | 8708769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 793285 |
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| End bp | 794544 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482805 |
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| Product | type I phosphodiesterase/nucleotide pyrophosphatase |
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| Protein accession | YP_003373927 |
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| Protein GI | 283783173 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1524] Uncharacterized proteins of the AP superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCTG AAATACCGTC TGAAAATGAT CTTTTGCAAT TTGTTGGTAA TGTTAAGTAC
GGTGATTTTT CTAATTCCGC AGTTAATGAA AATTTTTCTT ACGATTTTAA TGAAAAAAAT
CTTGGTGGAG CGTTACATAT ATCTTCGGTT CTTCCAGCTT TAAGTGATGC AATAGATGCT
CCTGTTAAAA CAGCTATTCA TAACGATCCA CACGCTTTGC GAGAAAGTCT TGGTTTCCCT
AAATCTAATT CTGCAATTGT AGTGTTAATA GATGGTTTAG GATACTGGAA TATTCTTATG
CGCAAAGGTC ACGCTCCTTA TTTACGATCC TTGCTTAACG AATCAATAAA TCAACGACCA
ATTAGCACGT GCGTTCCAAG CACAACTGTT GCTGCAATGG CTACTTTTGG AACAGGCACA
TGTCCTGGTC TTACTTGCAT GACCGGTTAC ACGCAAAAGA ATTCTCAAAC TGGTAAACTT
GCGCAGCTTA TTCAATTTAA TGATGCGCCT GATCCGCTAG TTTTGCAGCA AGAGCCGACT
ATATTTGAAA GTTTAGTTTC TAATGGAGTC CGTGCAGATA GCGTGGGATT ACCAAAGTTT
GAAAATACTC CTCTTACCAA AGCTGCTTTT CGTGGAGCAA ATTATATTAC TGCTGGAACT
CCTAGAGCTC GCATTCTTAA GGCTGCTAAT AACAGTAAAA CTCCAGGTTT AACTTATATG
TATTTACGTG ACGCTGATAA AACCGGTCAT AATTATGGTT GGGATTCTCA GCAGTGGGTT
TCTGTTTTTG AGCAAATTGA CGAGCAGTTG CGTCTTTTGC GAGCAAATTG TGCTCCTGGA
ACATTAATTG TTATTACTGC AGATCATGGG ATGATTAAAT CCGATCCCAA TAAGCGAATT
GATATTGCTA AACATGATGA GCTGATAAAA GGCGTATCGA TGGTTGGCGG TGAACCTCGT
TCTGTAATGT TGTATGCTAA CAGTGACGCA AATCCTGAAG ATATTATTTA CCGTTGGCGT
GAATATTTTG GAACTAATGC AATTGTACGC AGTAAAAAAC AAGCCATTGA CGATGGTATT
TTTGGTTTAG TAAACAACAG GGCAGAGGAT GTTATTGGCG ATGTTATTGT GCAAGCTTGT
GGAGCTTACA CAATTGTTGA TTCTCGCATT CAATCTGATA AAGCTATGAG TTTACCTAGC
GTTCATGGAT CGATGACTCA TATGGAAATG GATATTCCGT GCCTCATAGA TTTAGTGTAA
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| Protein sequence | MSAEIPSEND LLQFVGNVKY GDFSNSAVNE NFSYDFNEKN LGGALHISSV LPALSDAIDA
PVKTAIHNDP HALRESLGFP KSNSAIVVLI DGLGYWNILM RKGHAPYLRS LLNESINQRP
ISTCVPSTTV AAMATFGTGT CPGLTCMTGY TQKNSQTGKL AQLIQFNDAP DPLVLQQEPT
IFESLVSNGV RADSVGLPKF ENTPLTKAAF RGANYITAGT PRARILKAAN NSKTPGLTYM
YLRDADKTGH NYGWDSQQWV SVFEQIDEQL RLLRANCAPG TLIVITADHG MIKSDPNKRI
DIAKHDELIK GVSMVGGEPR SVMLYANSDA NPEDIIYRWR EYFGTNAIVR SKKQAIDDGI
FGLVNNRAED VIGDVIVQAC GAYTIVDSRI QSDKAMSLPS VHGSMTHMEM DIPCLIDLV
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