Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0694 |
Symbol | |
ID | 8709037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 785798 |
End bp | 786979 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482799 |
Product | transporter, major facilitator family protein |
Protein accession | YP_003373921 |
Protein GI | 283783167 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAACC TTCTTCTTGC TGTTATTTAT CTTGCTTTTA TAAGCTTGGG TTTGCCGGAT GCTCTTCTTG GAGCTGCGTG GCCTACGATG AGTCATGATG TTGGTGCGCA AATTTCTTGG GCTGGTGGAA TATCAATGGT TATTTCTGCA GGAACAATTG TTTCTGCGCT GCTATCTAAT AGGTTTACGC ATAAGTTTGG CCCTGGGAAG GTTACGCTTA TTTCAGTTGC TTTAACAGCT TTAGCGTTAC TAGGTTTTTC TTTTGCTCCG AATTATCTTG TGCTTATTTT TCTAGCTATA CCATACGGTT TAGGTGCTGG AGGAGTGGAT GCGGCTCTTA ATAATTACGT TGCAATTCAC TATGAAAGCT GGCACATGAG CTGGCTTCAC TGCATGTGGG GAATTGGTGC TTCCGCAGGT CCTTATGTTA TGGGTTTCGC ACTTTCTCAC GGTCAGCGCT GGCCTGCAGG CTACCAGTAT ATTGCTGTTA TACAAATTGC TCTCACTCTT GTGTTATTCA TAAGTTTGCC GCTGTGGAAA AATAATAATA AAAAGGCAGA GACGCATAAT CTTACTGAGG TAAAGAAACA ATCTTCTGGG ATGCTATCTT ACGCAGAAGT TTTGCGCATT CCAGGAGCTA AGAATATTCT TATTATGTTC TTTTGCTATT GTGCGTTGGA GCAAACTGCA GGATTGTGGG CTAGTAGTTA CATGGTTTTG CATGGAGGAG TTAGCCGCAT TGTTGCGGCA GGTTGGGCAA GCTTGTTTTA TGTTGGCATT ACAGTTGGTC GTTTTGTAAG CGGATTTCTT ACTATGCGTT TTAACGATGC AACGATGATT CGTATTGGGC AGTGCGTAAT GCTTATGGGC ATTCTAGTAT TGTTGCTGCC TTTGCCGAAT CATATTGAGC TTATTGCAGG ATTTGTAATT ATTGGACTAG GCTGCGCTCC AGTTTACCCA TGCATTATTC ATTCCACGCC GCATTATTTT GGTGCAGATA AGTCTCAAGC TATTGTTGGC ATGCAAATGG CAAGCGCATA TATTGGGTCT ATGGTAATGC CTGCGATTTT TGGACTAATT GCGCAGAATG TTTCTATGGT GCTTCTTCCG GCTTATTTGC TTATTCTTCT CGCTGTAATG ACTTTTATGC ACGTGCGCTT GCTTCGAACT TGCGAAAGTT GA
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Protein sequence | MINLLLAVIY LAFISLGLPD ALLGAAWPTM SHDVGAQISW AGGISMVISA GTIVSALLSN RFTHKFGPGK VTLISVALTA LALLGFSFAP NYLVLIFLAI PYGLGAGGVD AALNNYVAIH YESWHMSWLH CMWGIGASAG PYVMGFALSH GQRWPAGYQY IAVIQIALTL VLFISLPLWK NNNKKAETHN LTEVKKQSSG MLSYAEVLRI PGAKNILIMF FCYCALEQTA GLWASSYMVL HGGVSRIVAA GWASLFYVGI TVGRFVSGFL TMRFNDATMI RIGQCVMLMG ILVLLLPLPN HIELIAGFVI IGLGCAPVYP CIIHSTPHYF GADKSQAIVG MQMASAYIGS MVMPAIFGLI AQNVSMVLLP AYLLILLAVM TFMHVRLLRT CES
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