| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0692 |
|---|
| Symbol | rpoD |
|---|
| ID | 8709185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 781727 |
|---|
| End bp | 783196 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646482797 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_003373919 |
|---|
| Protein GI | 283783165 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGAGTG AAGTTGGATT AACGGTCGAC AGCGACGAAA TGCAAGATGA TACTAAGCCT
GTAAAAACTC GCAAGGCTAG CGTTGCGCGT AAAACCAGTA CTCGAACTTC GTCAGCTGAT
AGCAAGACGC GCAGTTCTCG CTCAAAGAAA ACTGAAGACA ACAAGATTGA TACTGAATCA
GTATCGGCTG ATGCTGAACA TGACGAAACT GAAGATAGCG TAGACATTGA ATCTCAAGAT
CAATTATCTA TTGACGATCC TTTAGATGAC GATTCACATC TTGATGTTGG TGATGAACAT
TTGAATCTTG ATGATTTGGA CGATATTCAG CCAGAAGATA TATCTGATGT TGACGATTTA
AGCGATATTG ACGTTGCAGA TGATCTTGAT GATGAAGAGT CTGAAGATCT TGATGAAATT
GATGATCACG ACGAAATTAA GCATGATGCT CCGCAAGTGC CACAAGCAAA AGGCGCATTT
GTTGTACGTG ATGATGACGA TGACGATAAT CTAACTCCAT CTGGTAATCC TAAGCGTCGT
GTAATTGCTA CAGGTGCTAC TGCGGATCCT GTTAAGGATT ATCTAAAGCA GATAGGTAGA
GTTAGCTTGC TTAATGCTGA GCAAGAAGTT GATTTGTCAG AGCGTATTGA AGCTGGATTG
TATGCTCAGC ATTTGCTTGA TACTCAAATT GATCAAATGG AGTTTAAGCG TAAACGTGAG
CTTAAGTGGG CTGCAGCAGA TGGCAAGAAA GCTAAAGATC ATCTTCTTGA AGCAAACTTG
CGTCTTGTTG TTTCTCTTGC TAAGCGTTAT ACCGGTCGAG GCATGCTTTT CCTTGATTTA
ATTCAGGAAG GTAACCTTGG TTTGATTCGT GCAGTTGAAA AGTTCGACTG GAAGAAGGGC
TTTAAGTTCT CAACCTACGC AACTTGGTGG ATTCGCCAGG CTATTACGCG TGCTATGGCA
GATCAGGCTC GTACTATTCG AGTTCCAGTG CATATGGTTG AGGTTATTAA TAAGCTTTCT
AGGGTTCAGC GTCAAATGCT TCAAGATTTA GGTCGTGAAC CTACGCCGGA TGAGCTTGCT
CGCGAACTAG ATATGCCAGT AGAAAAGGTT CAGGAAGTAC AAAAATACGG TCGTGAGCCA
ATTTCTTTGC ACACTCCTCT GGGCGAGGAC GGCGATTCCG AGTTCGGTGA TTTGATTGAA
GATACTGACG CAATCGCACC GTCTGATGCT GTTGCGTTCT CGCTCCTTCA AGAACAGTTC
AGGCAAGTTT TGGAAACTTT GGCTCCTAGG GAGGCTGGAG TTATTAAGAT GCGCTACGGC
TTGGAAGATG GTCAGCCAAA AACTTTAGAC GATATTGGTC GCGTTTATGG TGTTACTCGT
GAACGTATCC GTCAAATTGA GTCTAAAACA ATGTCTAAGC TGCGTCATCC TTCTAGATCG
CAAACTTTGC GTGACTTCTT AGATCAGTGA
|
|---|
| Protein sequence | MTSEVGLTVD SDEMQDDTKP VKTRKASVAR KTSTRTSSAD SKTRSSRSKK TEDNKIDTES
VSADAEHDET EDSVDIESQD QLSIDDPLDD DSHLDVGDEH LNLDDLDDIQ PEDISDVDDL
SDIDVADDLD DEESEDLDEI DDHDEIKHDA PQVPQAKGAF VVRDDDDDDN LTPSGNPKRR
VIATGATADP VKDYLKQIGR VSLLNAEQEV DLSERIEAGL YAQHLLDTQI DQMEFKRKRE
LKWAAADGKK AKDHLLEANL RLVVSLAKRY TGRGMLFLDL IQEGNLGLIR AVEKFDWKKG
FKFSTYATWW IRQAITRAMA DQARTIRVPV HMVEVINKLS RVQRQMLQDL GREPTPDELA
RELDMPVEKV QEVQKYGREP ISLHTPLGED GDSEFGDLIE DTDAIAPSDA VAFSLLQEQF
RQVLETLAPR EAGVIKMRYG LEDGQPKTLD DIGRVYGVTR ERIRQIESKT MSKLRHPSRS
QTLRDFLDQ
|
|---|
| |