| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0684 |
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| Symbol | raiA |
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| ID | 8710033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 771635 |
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| End bp | 772306 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482789 |
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| Product | ribosomal subunit interface protein |
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| Protein accession | YP_003373911 |
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| Protein GI | 283783157 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
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| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAATCG TCATTACTGG TCGTCATACG CAGATTAATC AAAGGTTCCG TGACGTTGTA
GAAAGTAAGA TGAATCGTGT GACCGCCATT GCGCCTGATG CGCAGCGCGT GCAAATCGTG
TTGACTCATG AAGGCAATCC AAGGCAGGCT GACACAGCAA AGCGAGTTGA AATTACTGTT
GTTGCAGGAA GCACTGTGAT TCGCGCAGAA GCTTCTAGCA CTGATCAATT TAGTGCATTA
GATATGGCGC TTGATAAGTT GACGCTTCGT TTGCGTCGTA CTCGCGATCG TCGTAAGGAT
CATCGCCGTG GATATACGGA AATGACCCCT GTAGATATGG GTGCTGTAGA GCCTGAGATT
GAGACTACTG TTGAAGAGGC AGAAGAAAAT GAGGTTAATA GCGCAGATGC TGCTGTTGCT
TCTGATTTAG GTCCTGGTGA ATCTGTGGAA GTAAGTGTTG GCGACACTCC TATTGTGATT
CGTCGTAAGC TACATATTGC AGAGCCTATG AGCATAGATG AGGCTTTGTA TGAGATGGAG
CTTATTGGGC ATGATTTCTT CTTGTTCGTA AACAAAGAAA CTATGAGACC ATCTGTAGTA
TATCGCAGAC ATGGTTGGAG CTATGGCGTA TTTGAAATTG ATACACCTGA AAATGTTGCT
AAGCAAAAGT AA
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| Protein sequence | MEIVITGRHT QINQRFRDVV ESKMNRVTAI APDAQRVQIV LTHEGNPRQA DTAKRVEITV
VAGSTVIRAE ASSTDQFSAL DMALDKLTLR LRRTRDRRKD HRRGYTEMTP VDMGAVEPEI
ETTVEEAEEN EVNSADAAVA SDLGPGESVE VSVGDTPIVI RRKLHIAEPM SIDEALYEME
LIGHDFFLFV NKETMRPSVV YRRHGWSYGV FEIDTPENVA KQK
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