| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0678 |
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| Symbol | |
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| ID | 8709152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 765614 |
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| End bp | 766714 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482783 |
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| Product | HAD hydrolase, family IIA |
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| Protein accession | YP_003373906 |
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| Protein GI | 283783152 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTTG AAACGAAAAA GAATTTTTCT TCATGTAATC GTCCGTTAAG CGATGCATTT
CGTTTAGCAC TGCTTGATTT AGATGGTGTT GTATATCGTG GTGGAAATGC TGTTGAATAT
GCGTCTGATT CCATTTTGTT TGCGCAAAAA AATGGAATGG CAATTGAATA CACAACTAAT
AATTCTTCGC GTTTCCAATC TGTTGTTGCA AAACAACTGG AAAGTTTTGG CTTAAAAGTA
GAACCATGGC AGATTATAAC GTCTTCTGTT GTTGCAGCAA GGATGGTAGC TCGCAATGTT
GAGAAAGGAT CCAAAGTTCT TGTTCTCGGC GCTGAACATT TGCGTCAAGA AGTGCAACGC
GTAGGATTAC AACTCGTAGA TTCGTGCGAA GATAATCCTA AAGCTGTTAT TCAAGGCTGG
TATCCTCAAA TGACTTGGCA AGAAATGGCG GAAGTTTCTT TCGCTGTTGA GCATGGTGCA
AAATATTTCG TTACTAACCG CGACTTAACT ATTCCAAGAG AGCATGGTAT TGCTCCTGGA
TGCGGTTCCA TGATTCAAGC TGTTATTAAT GCTACGGGTG TAGAGCCTAT TTCGTCTGCT
GGAAAACCAG AATCTGCAAT GTATGATGAA GCAAGGTTTT TGGTTGCTGC TAATGCTAAG
CATGATGATT CTGAATGTGA AGAATACACT GAAAAAGACG AGTATGGGAA TCCTGTAATT
AGTATTGAAC ATTCATTAGC AGTTGGAGAT CGTTTAGATA CTGATATTGA GGCTGGAACA
AGAGGAGGCT ATGCTTCATT ACTTGTTCTT ACTGGAGTTA CAGATCCTCG CATGCTTATG
CTTGCGCCAA AACATTTGCG TCCAAGTTTT GTTTCTAAAG ACTTGCGAGG ATTAAACGAA
TCTCATAACG CTCCTGAACG CGTTAACGGT AGTACTTTTA CTTGTGAAGA TGCTATAGCA
AGAGTTGTGA ATAATAATAT TATTGAAGTT AATAACACTA ACGATTGCAA TGCTTTAAGA
GCTGCTTGCG CGCTGGCATG GAGCTTGCAA GATTGCGGTG AAAATATGGA AAATTATACT
CTTCCGGAGT TTTCCTTATG A
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| Protein sequence | MQVETKKNFS SCNRPLSDAF RLALLDLDGV VYRGGNAVEY ASDSILFAQK NGMAIEYTTN
NSSRFQSVVA KQLESFGLKV EPWQIITSSV VAARMVARNV EKGSKVLVLG AEHLRQEVQR
VGLQLVDSCE DNPKAVIQGW YPQMTWQEMA EVSFAVEHGA KYFVTNRDLT IPREHGIAPG
CGSMIQAVIN ATGVEPISSA GKPESAMYDE ARFLVAANAK HDDSECEEYT EKDEYGNPVI
SIEHSLAVGD RLDTDIEAGT RGGYASLLVL TGVTDPRMLM LAPKHLRPSF VSKDLRGLNE
SHNAPERVNG STFTCEDAIA RVVNNNIIEV NNTNDCNALR AACALAWSLQ DCGENMENYT
LPEFSL
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