| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0676 |
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| Symbol | tyrS |
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| ID | 8709003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 762366 |
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| End bp | 763685 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482781 |
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| Product | tyrosine--tRNA ligase |
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| Protein accession | YP_003373904 |
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| Protein GI | 283783150 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGG TCAGGAACTA CAAGGAAGCA GGTTTTGCTT CTTTGTTTGA AGAGCTTAAG
TGGCGTGGAT TAATTTCACA ATCTACTGAT GAGCAGCAGC TTGCTCAAGC GCTTGACGGA
GAACCATTAA CGTATTATTG CGGTTACGAT CCTACTGCTG CTTCATTGCA TATTGGTAAT
CTTGTACAGC TTATTAATAT GCGCCATTTG CAGGCTGCAG GTCATCATCC TATTGCTTTA
GTTGGTGGTG CCACTGGTTT GATTGGTGAC CCTCGTCAAA GCGGAGAACG CACTCTTAAT
TCTAAGGATA TTGTGGCTGG CTGGGCTGAA CGTTTGCGTA AGCAGATTGG CAGAATTTTG
CCTCTTGATG GTGAAAATCC TGTTCGTTTT GTCAGCAATT ACGACTGGGT TTCTAAGATG
TCTGCTATCG ACTTCTTGCG TGATGTTGGT AAGAATTTCC GTGTTGGCAC AATGCTTTCT
AAGGATATTG TGGCTCGTCG CTTAAATTCC GATGAAGGTA TTTCTTTTGC TGAGTTTAGC
TATCAAGTTT TGCAAGGCAA CGACTTCTTG TACTTGTTTG ATAATTACGA CGTAACTTTG
CAACTTGGCG GTTCGGATCA GTGGGGTAAT CTCACTTCCG GCATGGATTT GATTCGTAAG
GTTCGTGGCA CATCCGTAAA CGTGTTTACT AGCCCGATTA TTACAGATAA TCAAGGTCGT
AAGTTTGGTA AGTCAGAAGG TAATGCCATG TGGCTTGATC CTTCTATGCT TAGCCCTTAT
CGCTTCTACC AGTTCTGGTT CAATCAGCCT GATGATGAAG TTGTTAAGTT GCTTAAGGTG
TTCACTTTCT TGCCAAAAGA TGAAATTGAG CGTTTAGCTC AGCAAATTCA GGATGATCCT
GGAAGTCGTG AAGCTCAGCG CGTGCTTGCG TGGGAAGTTA CAAGTTTCGT TCACGGTGAA
GATTTAACAA ACCAGGCTAT TGAAGCTTCT TCCGCTTTGT TTGGACGTGG TGATCTTTGC
AATATTGATG AGCAGACTCT TGAAGCTGCT TTAGATGGCG TTAAGGTTAA GGCTGAAGAC
GGTAGTTTAG ATTTCGCTAA GGCTAAAGTT GCAGATCGTG TTGTTGAGGC TGCAGTTGCC
GCTGGTCTGT TCCGCACTGT TTCTGAAGCT CGTCGTGCTA TTGAAGCAGG CGGTTTGTAT
CTGAATAATG AACGTGTAAG TGGTGTCGAC GATGTGTTAA GTGAGGGCTC TTTCTTGCAC
GGTCGTTTCG CTTTGCTTCG CCGTGGCAAG AAAGCTATCG GTGCCGTAGA GCGCGCTTAA
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| Protein sequence | MAQVRNYKEA GFASLFEELK WRGLISQSTD EQQLAQALDG EPLTYYCGYD PTAASLHIGN
LVQLINMRHL QAAGHHPIAL VGGATGLIGD PRQSGERTLN SKDIVAGWAE RLRKQIGRIL
PLDGENPVRF VSNYDWVSKM SAIDFLRDVG KNFRVGTMLS KDIVARRLNS DEGISFAEFS
YQVLQGNDFL YLFDNYDVTL QLGGSDQWGN LTSGMDLIRK VRGTSVNVFT SPIITDNQGR
KFGKSEGNAM WLDPSMLSPY RFYQFWFNQP DDEVVKLLKV FTFLPKDEIE RLAQQIQDDP
GSREAQRVLA WEVTSFVHGE DLTNQAIEAS SALFGRGDLC NIDEQTLEAA LDGVKVKAED
GSLDFAKAKV ADRVVEAAVA AGLFRTVSEA RRAIEAGGLY LNNERVSGVD DVLSEGSFLH
GRFALLRRGK KAIGAVERA
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