| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0675 |
|---|
| Symbol | argH |
|---|
| ID | 8709797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 760682 |
|---|
| End bp | 762199 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646482780 |
|---|
| Product | argininosuccinate lyase |
|---|
| Protein accession | YP_003373903 |
|---|
| Protein GI | 283783149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0165] Argininosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR00838] argininosuccinate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGATG CAACAAAAGC AGCAGCCGCA GAACTAGAAA ATAATGAAAG TAATAATACT
AATCACCCTA TTGCATTGTG GGGTGGACGA TTTAGTTCAG GTCCTTCAGC AGAGCTGACG
AAACTAAGCA AGTCCACACA ATTTGATTGG CGATTAGCGG ATGATGATAT TGCTGGTTCT
AGAGCTCATG CGCATGCGTT GCATCGTGCA GGTCTTCTTA ACGAAAAAGA GTATGCTGAT
TTATCTTGTG CATTAGATGA ATTGCAAAAG CGTGTAGATG ATGAAACTTT TGCACCCATT
GAGGAAGATG AAGATGAAGC TACAGCATTA GAGCGCGGTT TACTTGAAAT TGCTGGAAAT
GAGCTTGGTG GAAAGCTTCG TGCAGGTCGA TCTAGGAATG ATCAAATTGC AGCTTTAATA
CGTATGTTTT TGCGTAGGCA TGCGCGCGTT ATTGCATCAT TATTGTTGTC AGTTTGCCAA
GCGTTGCTGA ATCAATCAAA AAATGCAAAA GACGCAGTGA TGCCGGGTCG CACTCACATG
CAACATGCTC AACCAATTTT GCTTGCGCAT CAGTTAATGG CACATGTTTG GCCGCTTTTA
CGAGATGTAA ATCGCTTCAT AGATTGGGAT TTGCGTGCAG ATGAAAGCCC TTATGGAGCA
GGAGCTTTGG CAGGCAATAC TCTTGGTCTT AATCCAGAAG AAGTAGCTAA AGAGCTTGGT
TTTTCTAAAG TTTGCGCTAA TTCTATAGAC GCAACTGCAA GTAGAGACTT AGTCGCAGAA
TTTTCATTCA TCGCAGCAAT GATTGGCGTT GATATATCAC GATTAAGTGA AGAAATTATT
ATTTGGAATA CTCAAGAATT TGCATTTGTT CGTTTAGATG ATGCTTATTC AACTGGCTCA
TCGATTATGC CTCAAAAAAA GAATCCAGAT ATTGCTGAAC TTGCTCGCGG TAAAGCTGGT
AGATTAATAG GCGATTTAAC TGGTTTAATG GCAACTCTTA AAGGTCTTCC TACTGCTTAT
GCTCGCGATT TGCAAGAAGA TAAAGAAGCT GTTTTTGATC AAATTGACAC TTTAGAAGTG
CTTCTTCCAG CTTTTGCTGG AATGGTAGAA ACTATGAAAT TTGATCTAAA TAGACTTTAT
GAACAGTCTT CTACTGGTTT CGCTCTTGCT ACAGATATTG CAGAATGGCT TGTAAAAAAG
GGTGTTCCAT TCCGTAACGC TCATACTTTG TCTGGTTTGT GTGTAAAGCG AGCTGAGGGA
ATTGGGGGAG ATCTTGCTGA TTTAAGCGAT GATGATTTTT CAAATATTCT AAGCGGTTTT
GTTGATAGCG CAGAAATTGC GAATATCAGA ACAATATTGA CTAGTGCTGG ATCTGTGTCT
GCCAGATGCG GTCGTGGCGG TACAGCCTTC GCACGAGTTA AAGAGCAAAT TGTAGAGGCT
GAAAATGCAA TGGATAATTA TTATAAATTT GCAAATTCAA AAAGCGATGG TTCTGCTTAT
ATCTCGCCTA TAAAATAA
|
|---|
| Protein sequence | MHDATKAAAA ELENNESNNT NHPIALWGGR FSSGPSAELT KLSKSTQFDW RLADDDIAGS
RAHAHALHRA GLLNEKEYAD LSCALDELQK RVDDETFAPI EEDEDEATAL ERGLLEIAGN
ELGGKLRAGR SRNDQIAALI RMFLRRHARV IASLLLSVCQ ALLNQSKNAK DAVMPGRTHM
QHAQPILLAH QLMAHVWPLL RDVNRFIDWD LRADESPYGA GALAGNTLGL NPEEVAKELG
FSKVCANSID ATASRDLVAE FSFIAAMIGV DISRLSEEII IWNTQEFAFV RLDDAYSTGS
SIMPQKKNPD IAELARGKAG RLIGDLTGLM ATLKGLPTAY ARDLQEDKEA VFDQIDTLEV
LLPAFAGMVE TMKFDLNRLY EQSSTGFALA TDIAEWLVKK GVPFRNAHTL SGLCVKRAEG
IGGDLADLSD DDFSNILSGF VDSAEIANIR TILTSAGSVS ARCGRGGTAF ARVKEQIVEA
ENAMDNYYKF ANSKSDGSAY ISPIK
|
|---|
| |