Gene HMPREF0424_0673 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0673 
Symbol 
ID8709430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp758552 
End bp759154 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content38% 
IMG OID646482778 
Productarginine repressor, C-terminal domain protein 
Protein accessionYP_003373901 
Protein GI283783147 
COG category[K] Transcription 
COG ID[COG1438] Arginine repressor 
TIGRFAM ID[TIGR01529] arginine repressor 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATACAC ATATTCGTAT ATATTTAATT GAAAATATGT TTATGAAAGG TTTTGATAAA 
ATTATGATGA ATCCAGAAAC GGATGCAGAA TCAAATAACG AAGTGTCAAT AAAACAGCAA 
CGTCCTGCAA CAAAAGCAGC GCGTTTAAAC GCTATTGAAC AAGCGTTACT GGCAGAAGTG 
ATTACTTCTC AATCTCAACT CGCTAAAGTG TTGGCGCGTC ATGGTTTTAA TGTTACTCAA 
GCTACTTTGA GCCGAGATTT AGATGAGTTA AATGCCGTTA AAATTCGATT AACGGATGGC 
AGGATTGCGT ATGTGCTTGG CGATGGTACT GGCAATCGTC ATGCTATGGA TACTGTGCGA 
ATTGATCAGC AAGTTGCTCG CACTTTAGCA GGTCTTGTCA CTGAAGTTGG ACATGCAAAT 
AATATTGTTG TTATTCACAC TCCATCAGGC GCTGCACAAT ATGTTGCAAG TGTTATAGAT 
CGTCAGCCTT TGAAAGGTAT TTTAGGATCA GTTGCTGGAG ATGATACAGT TATTATGGTT 
TGCGTTTCAA ATGAAGAAGC TGAAAATCGA GCAAATTGGA TGCTTTCAGT AGCTTCTCGT 
TAA
 
Protein sequence
MYTHIRIYLI ENMFMKGFDK IMMNPETDAE SNNEVSIKQQ RPATKAARLN AIEQALLAEV 
ITSQSQLAKV LARHGFNVTQ ATLSRDLDEL NAVKIRLTDG RIAYVLGDGT GNRHAMDTVR 
IDQQVARTLA GLVTEVGHAN NIVVIHTPSG AAQYVASVID RQPLKGILGS VAGDDTVIMV 
CVSNEEAENR ANWMLSVASR