| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0672 |
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| Symbol | pheT |
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| ID | 8708914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 755737 |
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| End bp | 758358 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482777 |
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| Product | phenylalanyl-tRNA synthetase, beta subunit |
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| Protein accession | YP_003373900 |
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| Protein GI | 283783146 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
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| TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAATGG TAGATATTGA CTGGCTCAAA GATCATGTTG AAGTGCCAGA AGGTTTAACT
TACGAACAGC TTGCTAAAGA TTTAGTTCGT GTTGGTCTAG AGGAAGAAGA AATTCATACT
TCTCAAGTTA CCGGTCCAAT TGTTGTCGGT TACGTAGTTG ACGCTACTCC TGAACCGCAG
AAAAATGGCA AAACTATTAA TTGGTGCCAT GTTGATGTTG GAGATAAATA CAACGATGTT
GACGAGAACG GCAAGAAAGT TCCTCGTGGC ATTGTTTGCG GTGCTCCTAA TATGGCTGCC
GGTGAAAAGG TTGTTGTAAC TCTTCCTGGT GCTGTTCTGC CTGGAGATTT TAAGATTGAG
CCGCGTAAGA CTTACGGTCA TATTTCTGAC GGTATGTGTG CTTCAGAGCG TGAGCTTGGT
TTGGGAGATA GCCACAATGG CATTATTTTG TTGCGTGAAT ATGGCTTCTC TAAGGCTGAA
TACGATGAGT TGAAGCCTGG CGACGACGTA ATGGAGTTGT TGCATCTTAA TAAGCCGATT
TTGGAGATTA ACATAACGCC TGATCGTGGA TATGCTTTCT CTTATCGTGG TGTTGCTCGC
GAATATCATC ATTCAACTGG TGCTGTTTAT ACGGATCCTG TTTCAAAGTT GAATGAGCAG
GTATCGCAAA TTAATGATGA AGGTCACAAG ACTTCAGATA TTGACGTGAG TATTGAAGAT
ACTAATCCAA TTCATGGTGT ACCTGGTTGT GATCGATATT ATGCGCGTGC TGTACACGGT
TTTGACTCCA CTTGTGCAAG CCCACGTTGG ATGCAGCGTC GTTTAACGCG TGCAGGTATG
CGCAGTATCT CTCTTGCTGT TGATATCACT AATTATGTCA TGCTTGATTT GGGTCAACCT
CTTCATGCTT ATGATTTAGA CAAAATTGAA GGTCCAATTG TAGTTCGTCG TGCACATGAG
GGCGAACATC TTACGACTTT GGATGGCAAA GATCATGAAT TGCATGTTGA GGATTTAGTT
ATTTGCGATT CTCCTCGTGG AAACCATGGT TCACGCGTGC TTGGCTTAGC AGGTGTTATG
GGCGGCATGT ATGGCGAAGT TACGAGTGAA ACGAAAAATA TTTTGATTGA GGCAGCGCAC
TTTGATCCCG TTTCAATTGC TCGTACTGCT CGTCGACATA AGATTCCTTC TGAGGCTTCT
CGTCGTTTTG AGCGTGGCGT TGATACCCAA TTGCAGCCAG CAGCTGCACA AATGGCTGCA
AATCTTTTGG AACAGTTTGG TGGAGCTAAG CCATCTACAT CGCCGTGTGA TGTCAATAAT
ACTCAGTCGC GAAATGTGAT TGTGTTTAAA GCTAATGAAG TGCAGCGAGT TGCCGGTTTG
GATGTTGATT TGAATCGCAT TAGCGATATT CTTACCGATA TTGGTTGCTC TGTTGCTGGT
GGTGGAAATG GATCCTTCTC CGTTCTTCCT CCAACTTGGC GTCCTGATTT GAATGAGCCT
TGCGATCTAG TAGAGGAAAT TGCTCGACTT GTTGGATATG ATGAGATTCC TGTTAAGGTT
CCTGCTGTTC CTGTTACTGG TCGAACTGGC TTAACTGCGC AACAGCAAAC TAGACGAGCT
ATTGCTTATG AGTTAGCAGA AACTGGTTTT GTTGAATCTT TAAGCTATCC ATTTGTTGGT
GAGGAAGATA TTAAAGCTTT CCGTCAAAAT GTGGATGAAG TTGCTGAAGT AAGTGTTCGT
ATTGCTAATC CTTTAGCTGG AGACAGGCCT TGGCTTCGTC GTTCTGTTTT GATGACTTTG
GCTGGTACTG TTCGACGCAA TCTTCATCGT GGTTTAACAG ATATTTCCAT GTATGAGCTT
GGTCATGTGT ACTTTAGCGA TCCAAATGCT CCTGCAATTC CTGCATTACC TGGTTCTGTT
AGACCTTCTA ATGCTGAGCT TGCTGCGTTG GATGCTGGAT TACCGGAACA ACCTTTGCAT
GTTGCTGCTT TGCTAACTGG TCATGCTGAA GAAACTGGTT GGCTTGGTAC TCATAGAGAT
GTTGATTGGA GCGATGCTGT TGAAGCACTC CAGCGAGTTG GTAAGAGAAT TGGTGTTAAG
TTCATTCTCG AACAGTTTAA AGCTCAAGAT GCTCCATCTT CTTGGCATCC TGGTCGTAGT
GCTCAAGTTT GTGTTCTTGC TGAAGATGGT TCAAGCGTCA ATCTCGGTGT TGTTGGCGAA
TTGCATCCAC ATGTTTGTGA AGCGCTAGAT TTACCTAAGC ATTCTGCAGC ATTCGAGCTT
GATTTAACTG AATTGTTTAA GAATATGATT ATGAAGCCTG TTCAAGCTAA ACCAATTTCG
ACTTTCCCTC CTGTAAAGCA AGATTTCGCT TTCACTGCAC CAATTGAGTT GAAAGCGAAT
GAATTGCAGT CTGCTATTGA AAAGTCTGCT GGAGATTTGC TTGAATCTGT TGAGTTGTTC
GATGTGTATG AGGGTGAGCA GCTTGGAGAA GGTTTGCGTT CTCTTGCTTA TTCCGTAACG
TTCCGAGCAA ATGATAGAAC ACTTTCTGGC GAAGAGATGG AAGAAGTTCG TAAGAAGATT
ACGGATGCTG CTGAAGTCTT GCACGCAACT TTGCGAGTGT AA
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| Protein sequence | MPMVDIDWLK DHVEVPEGLT YEQLAKDLVR VGLEEEEIHT SQVTGPIVVG YVVDATPEPQ
KNGKTINWCH VDVGDKYNDV DENGKKVPRG IVCGAPNMAA GEKVVVTLPG AVLPGDFKIE
PRKTYGHISD GMCASERELG LGDSHNGIIL LREYGFSKAE YDELKPGDDV MELLHLNKPI
LEINITPDRG YAFSYRGVAR EYHHSTGAVY TDPVSKLNEQ VSQINDEGHK TSDIDVSIED
TNPIHGVPGC DRYYARAVHG FDSTCASPRW MQRRLTRAGM RSISLAVDIT NYVMLDLGQP
LHAYDLDKIE GPIVVRRAHE GEHLTTLDGK DHELHVEDLV ICDSPRGNHG SRVLGLAGVM
GGMYGEVTSE TKNILIEAAH FDPVSIARTA RRHKIPSEAS RRFERGVDTQ LQPAAAQMAA
NLLEQFGGAK PSTSPCDVNN TQSRNVIVFK ANEVQRVAGL DVDLNRISDI LTDIGCSVAG
GGNGSFSVLP PTWRPDLNEP CDLVEEIARL VGYDEIPVKV PAVPVTGRTG LTAQQQTRRA
IAYELAETGF VESLSYPFVG EEDIKAFRQN VDEVAEVSVR IANPLAGDRP WLRRSVLMTL
AGTVRRNLHR GLTDISMYEL GHVYFSDPNA PAIPALPGSV RPSNAELAAL DAGLPEQPLH
VAALLTGHAE ETGWLGTHRD VDWSDAVEAL QRVGKRIGVK FILEQFKAQD APSSWHPGRS
AQVCVLAEDG SSVNLGVVGE LHPHVCEALD LPKHSAAFEL DLTELFKNMI MKPVQAKPIS
TFPPVKQDFA FTAPIELKAN ELQSAIEKSA GDLLESVELF DVYEGEQLGE GLRSLAYSVT
FRANDRTLSG EEMEEVRKKI TDAAEVLHAT LRV
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