Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0657 |
Symbol | mfd |
ID | 8708796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 738523 |
End bp | 742131 |
Gene Length | 3609 bp |
Protein Length | 1202 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482763 |
Product | transcription-repair coupling factor |
Protein accession | YP_003373887 |
Protein GI | 283783133 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCTG ATAGCAGGTC TAATATCAAA AACAACAAGA ATGATAAGAC TGATGATATT TCAGCAATAA GCTTGAGAGA TATTCTTAAT GATTTATCAA CTAAGGATTC ACTTTTTAAA GCTTTATCTG AATATAATCT TGATGCGATA TCTGATTATT GTTGCGAAAG TGCAAATAAA AATCGTAAAG ATTTAGATTC AATAAGTGGA GATTTAACAA TTTCTTCTCC TATTGGCATT CGTTCTGCTA TTGTTGCTGC ATTAGCTAAG AAAAAGCCGG TTGTTGTTAT TGTTCCATCG AGTAGAGATG CTGAAGATTT TATTGCATCT GTACGTGATT GGTACGATGG TGATGCTCAA GACGTTGCTA AATTAGAAGC GTGGGAAACG TTACCTCATG AAAGGCTTTC GCCTAGAGCA GATACTGTTG CTAGCAGGAT TGCAGTGTTT CGTAGGCTTT GCCATCCTGA AAATAACACA TCACTTTTTG GTCCGATTCG CGTGTTGGTT ATGCCTGTGC GATCGCTTAT TCAGCCTGTA GTTGAGGGCA TTGGTGATAT AGATCCTCTG TTATTTGAGT GCGGAAAAGA ATTAACTCTT GAATATGCTG TGAAACGTTT GGTAGAAAAC GCATATAATC GTGTTGATTT GGTGATGGAA CGCGGAGAGT TTGCTGTTCG CGGTGGAATT ATTGACGTTT TTGCGCCAAC GATGACACAT CCTGTGAGAA TTGAATTTTT TGGTGATGAA ATTGATACTA TAAAGCAATT TCATGCTTCT GATCAGCGCA CTTATGGCAA TAATATTGCA AGTATTTGGG CTACGCCTTG TCGTGAGCTT CAGATTACAG AAAAAATTTG CAAGCGTGCG CGTTCTCTTA TTGGCTCAAT TCCAAATGCT GACGATATGC TTGAATCAAT CGCAAATTCT ATACCTGTAG AAGGTATGGA GTCTTTGTTG CCTGCACTAG TTGATCGCAT GGAATCAGTG CAAAATATGC TTCCAAAGGA ATCTGTTATT ATTCTATCTG ATCCCGAAAA ATGCCGTAGA GCTGCAGATG ATGTAACTGC TACAGCTAAC GAATTCTTAG CAGCTAGTTG GCATGTTGCT GCTTCTGGTC ACGGTTCTGG AGCTCCAATA ACATTCGATC AAGCTAATTT CTTGGATTTT GATGAAACGA TTTCATCGTT AGAATTGTCT AATCATGACG TATGGAAATT AACATCTTTT GGTGTTGACA ATCAAATTTA TGGAAATATT GCTTTGCCAG CATCGGCGCC ACAAGAGTTT CGAGGAGATG AATCGAAAGT TTCTGGCGGC ATCACTTCTC TTGTTGACAA TGGTTTTGCT GTAACTATTA CTGCAGCTGC TTCTGGTACT CTTGCACGCT TGAGGCGCGC TATATATGCG ACTGGTGTAC ATGAATTTAC TACAGTGCGC TCAAGTATTT CGGATGGCTT CATTGATAAT GTTGCGCGTA TCGCGATTCT TACAGAGCGT GATCTGACAG GTAAATCTTC TGCATCAGCT CAACTAAAAA CTCCAAAACG CAGGCGCAAA GCAATCGACC TAATGGAACT AAAGCCTGGT GATTTCGTTG TGCACGAGCA GCATGGTATT GGACGTTTTG TTGGCATGAA ACAACGTAAT ATTGCTGTTT CGGGTGGCAG TGCAACTCGC GAATATTTAG TCATTGAATA TGCTCCTAGC AAACGTAACG CTCCTAACGA TAAGCTTTTT ATTCCAACTG ATCAGCTTGA TTTAGTGAGT AAATATATAG GTGCAGAAAT ACCAAAGCTT AACAAGCTCG GAGGTTCCGA CTGGGCTCAA ACTAAAGCAA AGGCTAAAAA GCATGTTCAT GAAATTGCTG AAAATCTTAT TAAACTTTAT TCAGCAAGGC AGCAATCTCG CGGATTTGCA TTTAGTAAAG ATACTCCTTG GCAAAAAGAG TTGGAAGACG CATTTCCTTA TCAAGAAACT GCTGATCAGC TTACAACTAT TGATGAAGTA AAAGCAGATA TGGAAAACCC AATCCCAATG GATCGCTTAA TTTGTGGAGA TGTTGGTTTT GGTAAAACTG AAATTGCGTT ACGTGCAGCT TTTAAAGCTG TGCAGGATTC CAAGCAAGTT GTTGTTTTAG TTCCAACGAC CTTGCTTGTT CAGCAGCATT ACGAGACTTT TACAAATCGC TTTGAAGGAT TCCCTGTAAA AGTTGCTGCA ATGAGTAGAT TCCAAACTTC TAAAGAGATT GAAGAAACTT TAGCTGGATT GCAAGATGGA AGCATTGACG TTGTTATTGG AACGCATAAG CTTTTGAATC CTAGTATAAA GTTCAAAGAT TTAGGTTTGG TTATTATTGA CGAAGAGCAG CGTTTTGGTG TGGAACATAA GGAAACGCTT AAAGCTTTGC GCACAAACGT TGACGTATTA AGTCTTTCGG CAACGCCAAT TCCTAGAACT CTTGAAATGG CTGTAACTGG GATTCGTGAA ATGTCTACTC TTGCAACTCC TCCAGAAGAT AGGCTTCCAG TGCTTACATA CGTTGGTGCG TATGATAATT CTCAAGTTGC TGCATGCATT AAGCGTGAAT TGTTGCGTGG GGGTCAGGTT TTTTACGTCC ATAATCGCGT TGAAGATATT AGTTCTGTTG CAAGTAAGAT TCAGGAGCTT GTGCCAGATG TTCGTGTTGC TATTGCTCAT GGAAAAATGG GTGAGAAGCA GCTCGATGCT GTTATTCGTG ATTTTTGGCA TAGAGATATT GATGTGCTTG TTTGTACAAC GATTATTGAA ACAGGTCTTG ATATTTCTAA TGCGAATACA CTTATTGTCG ATCACGCAGA TAGATTCGGT TTAAGCCAGT TGCATCAGCT TCGTGGTCGA GTAGGTAGAG GTCATGAGCG TGCTTACGCT TACTTTTTGT ATGATCCGTC TAAGCCTATG ACACAACAAT CTCACGATAG GCTCTCAACA ATTGCTCAGC ATACTGCGCT TGGTTCTGGT TTTGATGTTG CGATGAAAGA TTTGGAATTG CGCGGAACTG GAAATTTGCT TGGAGATGAG CAAAGTGGAC ACATTGAGGG TGTTGGATTT GATTTGTATG TTCGTATGGT TTCTGAAGCT GTTGAAAAAT ATAAGGAACC TGAAAGAGTT GAGCCTGTTT GCGTAACTAT TGATCTTCCT GTTGAAGCTT CTCTTCCAGT TGATTATATT GCCTCTGACA AGCTTCGTTT GGAAGCGTAC AGGAAGCTTG CTGCTGCTAA GGATAATAGT GATTTGCAAG AACTTCACGA TGAGCTTCTT GATCGCTTTG GTAATCCACC TGAAGAGTTT GAGTCTTTGT GTGATGTTGC TCGTTTGCGT TTTAAAGCAC GCGAGATTGG TATTACGCAA ATCAGCTCTC AAGGAAAATC AGTGCGAGTT GTTGGCATCG ATCCAAAAGA GTCTGTGATG ATGCGTTTGA AGCGTATTTA TAAAGGATTG CAGTATCGTC CTCTTACTCA TATGCTTATT GTTCCAGCTC CTTTTGAATC TTCACTCGGG TCTGGTTCAA TGAGTGAATC AGATATTCTT AAGTGGTCTA AGCAATTACT TGAAGACTTA GCGTGGTGA
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Protein sequence | MAADSRSNIK NNKNDKTDDI SAISLRDILN DLSTKDSLFK ALSEYNLDAI SDYCCESANK NRKDLDSISG DLTISSPIGI RSAIVAALAK KKPVVVIVPS SRDAEDFIAS VRDWYDGDAQ DVAKLEAWET LPHERLSPRA DTVASRIAVF RRLCHPENNT SLFGPIRVLV MPVRSLIQPV VEGIGDIDPL LFECGKELTL EYAVKRLVEN AYNRVDLVME RGEFAVRGGI IDVFAPTMTH PVRIEFFGDE IDTIKQFHAS DQRTYGNNIA SIWATPCREL QITEKICKRA RSLIGSIPNA DDMLESIANS IPVEGMESLL PALVDRMESV QNMLPKESVI ILSDPEKCRR AADDVTATAN EFLAASWHVA ASGHGSGAPI TFDQANFLDF DETISSLELS NHDVWKLTSF GVDNQIYGNI ALPASAPQEF RGDESKVSGG ITSLVDNGFA VTITAAASGT LARLRRAIYA TGVHEFTTVR SSISDGFIDN VARIAILTER DLTGKSSASA QLKTPKRRRK AIDLMELKPG DFVVHEQHGI GRFVGMKQRN IAVSGGSATR EYLVIEYAPS KRNAPNDKLF IPTDQLDLVS KYIGAEIPKL NKLGGSDWAQ TKAKAKKHVH EIAENLIKLY SARQQSRGFA FSKDTPWQKE LEDAFPYQET ADQLTTIDEV KADMENPIPM DRLICGDVGF GKTEIALRAA FKAVQDSKQV VVLVPTTLLV QQHYETFTNR FEGFPVKVAA MSRFQTSKEI EETLAGLQDG SIDVVIGTHK LLNPSIKFKD LGLVIIDEEQ RFGVEHKETL KALRTNVDVL SLSATPIPRT LEMAVTGIRE MSTLATPPED RLPVLTYVGA YDNSQVAACI KRELLRGGQV FYVHNRVEDI SSVASKIQEL VPDVRVAIAH GKMGEKQLDA VIRDFWHRDI DVLVCTTIIE TGLDISNANT LIVDHADRFG LSQLHQLRGR VGRGHERAYA YFLYDPSKPM TQQSHDRLST IAQHTALGSG FDVAMKDLEL RGTGNLLGDE QSGHIEGVGF DLYVRMVSEA VEKYKEPERV EPVCVTIDLP VEASLPVDYI ASDKLRLEAY RKLAAAKDNS DLQELHDELL DRFGNPPEEF ESLCDVARLR FKAREIGITQ ISSQGKSVRV VGIDPKESVM MRLKRIYKGL QYRPLTHMLI VPAPFESSLG SGSMSESDIL KWSKQLLEDL AW
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