| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0642 |
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| Symbol | |
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| ID | 8709894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 715809 |
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| End bp | 718502 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482748 |
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| Product | efflux ABC transporter, permease protein |
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| Protein accession | YP_003373872 |
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| Protein GI | 283783118 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.17637 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGAAAA TCGCGCTAAA ACTTATGCGT AAAAGCGTGC GCATGCTAAT CGCCTCTGGA
ATTGCAATTC TTATAGGCAG CATGTTTATG AGCGCTACTT TGCTTTTTGT AAACAGTGTT
GACGACTTGA TGGTTCGCAA TGCAACGGAA GAATTCCATA GCGCAAATTA TGCAATCTCA
TCTAAAAGCT CTAACAGTTC TCCGAATAGT GGAATTCATT ATAAAGACCT TCATTTAGAC
GAAATATCGA AGATGCCTGG TGTCAACGGT ATTCGTAGTG ACGATGCGAC TGCGCTTGTA
GGAGTAGAAA AAGGTGATAA ATCAGTTACA AGTATTGCTT GGTCTAGTGG TTTGTATGGA
AATCTTCCTG TGTATAAATC AACAGAAGGT AGAGATCCGC AAAAAATAGG CGAAATTACG
CTTATTAAAA GTATTGCTAA ATCCATACAT GCAAATATTG GCGATACTAT AACCTTGGTT
AAAGTAGATG AAGCTGGCGG AAATAAAGAA AAATCATACG ATGTTCGTGT GGTTGGTCTT
GTTGACGATG GAGAACATTC TCAAATACCA ATTTCAAATC GCGGCACGTA TCTTGGTGGC
ATAACGAATG ATTTTTGTGC AAAACTCAAC AATCTTAAAA ATTTTGACAA TCAAGTTGTG
CAAAGCAAAG TGTACATGAG TATTGATGAA TCTAAAATAA ACGATTTATC TCCTAAGATT
AACGCTTTGC TTCCAGAGCA ATTTTCTCTT ATGTCTAGGC ACGAAGTTGG TGTAAGAGCT
GTTCGAAGTG TGTCAAACGG CACAAATTTT GTGACTATGT TCTTGCTATC GTTTGGTGTT
CTAGCGTTGC TTATTTCTTC GCTTGTTATA GCAAACACAT TCCAAGTTTT GGTTGCTCAA
CGCAGACGCA CTCTTGCGCT TTTGCGCGTA ATCGGTGCAC AATCGCATCA GCTTTATACA
GCAGTTTTGC TTGAAGCTGC AATACTTGGA GTTATTTCTG CGGCTATTGG CGTGCTTTGC
GCAATAGGAT TTATGGGCGC AATTAGTAAC TTGAATATTA ATTCTGGACC ATTATCTAAA
ATTCCTTTGA TTGTTTCACT TCCGGCGATT GTGTGGCCAA TAGTAATTGG CGCGATTGTA
ACAGTTCTTG CATCTATGGG TGCTGCGCGA TCTGCTACAA AAGTAACGCC TATGGAAGCG
TTGCGACCAA TGGATTTGAT GAAAGATAAG CGTGCAAGCA TTATTCGCGC TGTTTTTGGC
GTTCTATTTA TTGTTGTAGG TATTTTATTT ACGGCTTTAA GTTCTACTTC TTTGGCAAGC
ATGATTGCTC AGCAGTCACC TAATGCTGGT GCTGACTCTT GGAGGACTTT GATTGGAGCA
GTTTTTGGAT GCGCGCTTGT GTTTATTGGA ATTATTATTA CAGCAACATT CTGGATGCCG
TTTGCTATGA AGGCAACTGG CGCAGTTATG GCACTTTGTG GGCCTGCTTC TAAAGTTGCT
AACGCAAACG TGCAACGAAA CCCTAGAAGA GTTGCAGCAA CTGGAACAGC TTTGCTTATT
GGCGTAACTC TTGTTTCAAC AGTAGTAACT GGCGCAATCT GCGGTAAAGC AACTCTTAAA
GGTGTTGTTG ATGACCGTTA CAGTGTTGAC ATTATTATTC AAGGCAAGAA TGTTGATGAA
TCTTTAGCTG CCGACATTTC AAAGATTAGT GGAATAAAGC ATACTGAGTT GCTTCCTGCA
GTTCCTATGA CTTTTAAGAA CGCTAAGGGC AAAACTGAGT ACGCTATGGC AGCTGGAGTT
GATAATGTAA ATCAACTTAG AAATGTAATG CACACTGACC TTGATGGCGT TAATATAAAC
AAAGATTCTG TGCTTTTGCC TAAGTTTAAT GATGAAGGTG GAGAGCCTTT TGATCTTAAA
AAAGGAAGTC TTAATCTGCA GGCTTATGTA GAAAAGTACA GTTCTGGTGA AACAGACAGT
GATAATATTA CGCCATTTAC TGGCATGAAT ACAGACTCTA GTAATAACGA TAAGAGCATT
ACTGTAAAGC AAGTTCAGTT TAAGAAGTAT CGAAATGTTG GTGTGTATTC AAATAATACT
GCTTTTGTGA GCAAATCCTA CTTCAATAAC TACCTTAAGC CTACAACGCA TATTTTGCTC
ATTTCGGTAG ACTCTAGCAA AGCTAATCTT GTAGATATTG CTAAAAACAT TCGAAATGTT
ACATCTAGTT ATGCGGAGGT TGTGTCTACT GGAAGCGTGT TTGAGCGAGC AAAGTGGGAG
AGTACTATCG ACGCAATGAT GATGGCGCTT GTTGGCTTAA TAGCAGTAGC TGTTGTGATT
GCTTTAATAG GCGTTGCAAA CACATTAAGC TTGTCTGTTA TTGAGCGAAC CAAAGAATCT
GCAACTTTGC GCGCAATCGG CATGACAAGG GGACAGGTTA GAAGGTCTCT TGCATTGGAA
GCAACGTTGA TTTCCTTAAC AAGCACTGTT TCAGGCTTGA TTGTTGGAAC AGCATTTGGT
TGGATTGGAT CCTACATGGT ATTTAGCACA ATTGGCAAAG TTCCGTTTGT AGTTGATTGG
ACTATTTACG CGGTTCTTGC TCTCATCGCT TTGCTTGCAG CTCTTCTTTC CAGCGTGCTT
CCAGCTCGTA GAGCAGTGAA GTCTTCGCCA GTAGTTGCGC TCGCGGAGGA CTAA
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| Protein sequence | MWKIALKLMR KSVRMLIASG IAILIGSMFM SATLLFVNSV DDLMVRNATE EFHSANYAIS
SKSSNSSPNS GIHYKDLHLD EISKMPGVNG IRSDDATALV GVEKGDKSVT SIAWSSGLYG
NLPVYKSTEG RDPQKIGEIT LIKSIAKSIH ANIGDTITLV KVDEAGGNKE KSYDVRVVGL
VDDGEHSQIP ISNRGTYLGG ITNDFCAKLN NLKNFDNQVV QSKVYMSIDE SKINDLSPKI
NALLPEQFSL MSRHEVGVRA VRSVSNGTNF VTMFLLSFGV LALLISSLVI ANTFQVLVAQ
RRRTLALLRV IGAQSHQLYT AVLLEAAILG VISAAIGVLC AIGFMGAISN LNINSGPLSK
IPLIVSLPAI VWPIVIGAIV TVLASMGAAR SATKVTPMEA LRPMDLMKDK RASIIRAVFG
VLFIVVGILF TALSSTSLAS MIAQQSPNAG ADSWRTLIGA VFGCALVFIG IIITATFWMP
FAMKATGAVM ALCGPASKVA NANVQRNPRR VAATGTALLI GVTLVSTVVT GAICGKATLK
GVVDDRYSVD IIIQGKNVDE SLAADISKIS GIKHTELLPA VPMTFKNAKG KTEYAMAAGV
DNVNQLRNVM HTDLDGVNIN KDSVLLPKFN DEGGEPFDLK KGSLNLQAYV EKYSSGETDS
DNITPFTGMN TDSSNNDKSI TVKQVQFKKY RNVGVYSNNT AFVSKSYFNN YLKPTTHILL
ISVDSSKANL VDIAKNIRNV TSSYAEVVST GSVFERAKWE STIDAMMMAL VGLIAVAVVI
ALIGVANTLS LSVIERTKES ATLRAIGMTR GQVRRSLALE ATLISLTSTV SGLIVGTAFG
WIGSYMVFST IGKVPFVVDW TIYAVLALIA LLAALLSSVL PARRAVKSSP VVALAED
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