| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0641 |
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| Symbol | |
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| ID | 8709244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 714952 |
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| End bp | 715791 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482747 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373871 |
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| Protein GI | 283783117 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.202535 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGTC CGTACGAAAC AAGCTCATAC GAGCAAGAAA ATGCTTTAGA TTTTAGAGCA
GATTTTAACC AAAACTTGAT TGGTGAAACA GCAGTTGCAG CTTTGCATGT TGTTAAAGAT
TTTGGCAAGG GTGCAGGCAT TGTTCACGCT TTGCGAGATG TAAGCGTAAG TTTTGAACGC
GGCAAGTTTA CGGCGATTAT GGGTCCTTCT GGTTCCGGAA AGTCAACTTT AATGCACTCT
TTGGCTGGTC TTGACAGCGT TAATTCTGGA AAAGTTTTGG TAGATGGCCT AGATATTACA
GGCATGAGCG ATAAGCAGCT TACGCTTATG CGACGCGAAA TGGTCGGATT TATTTTCCAA
AGTTTTAATC TTCTTCCAAT GTTTAGCGCT GAGCAAAATA TTCTCATGCC TCTTACTTTG
GCGGGCAAAA AGCCAGATAA GCAATGGTTT AATACTTTGG TTTTAACTCT TGGATTGCAA
AATCGATTAC ATCACAGACC TGCTGAGCTT TCAGGCGGTC AGCGTCAACG TGTTGCAATT
GCTCGAGCTT TAATCTCTAA GCCTTCCGTA GTTTTTGCAG ACGAGCCTAC CGGAAATCTT
GACTCTGCTT CCAGCTCAGA AGTTTTGCAT TTCTTGAAGA AGTCCGTAAC GGAGCTTGGT
CAAACTGTGA TTATGGTTAC TCACGACGCT GTTGCAGCCT CTTACGCGGA TCGAGCAATC
GTGTTTGCAG ATGGCCAAAT CGTTGAAGAT GTGCAAAATC CTACTGCGGA AGGCATGAGC
AAGATGCTTA TGGAACGCAG CGAGGCTGGT ATTAGTAATC AGTCTGCTCA ATTGCAATAA
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| Protein sequence | MNSPYETSSY EQENALDFRA DFNQNLIGET AVAALHVVKD FGKGAGIVHA LRDVSVSFER
GKFTAIMGPS GSGKSTLMHS LAGLDSVNSG KVLVDGLDIT GMSDKQLTLM RREMVGFIFQ
SFNLLPMFSA EQNILMPLTL AGKKPDKQWF NTLVLTLGLQ NRLHHRPAEL SGGQRQRVAI
ARALISKPSV VFADEPTGNL DSASSSEVLH FLKKSVTELG QTVIMVTHDA VAASYADRAI
VFADGQIVED VQNPTAEGMS KMLMERSEAG ISNQSAQLQ
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