| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0633 |
|---|
| Symbol | |
|---|
| ID | 8709500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 704689 |
|---|
| End bp | 706077 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 646482739 |
|---|
| Product | putative PTS system, sugar-specific IIC component |
|---|
| Protein accession | YP_003373864 |
|---|
| Protein GI | 283783110 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3037] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.2305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGGAA TTCTGTCAGT ACTGCTCGAT ATTTTCAGAC AGCCATCTGT TATAGTTGCG
CTTATTTCTT TTATTGGGCT TGCAGTGCAA AGAAAGAAAT TCTCGGATAT TTTGCAAGGA
TCAATCCGTA CTCTTGTTGG TTTTCTTGTT TTAGCAGCTG GTTCTGGAGT TATTACTGAA
GCGTTGAACC CCTTTGGCAA AATGTTTCAA TACGCATTTC ATGTGCAAGG CGTAGTGCCG
AATAATGAAG CAATTATTGG AACTGTTTTA TTGAAGTATG GCTCTGAATC TGCGCTTATT
TTCTTCTTTG GAATGATTGT TAATATTATT CTTTCTATTA CTTCTCGTTT TAAATTTATC
TATTTAACGG GTCACGTAGC TTTCTATATG GCAAGTATGC TTGCAGTTAT ATTTAATGTT
GCAGGATTTA GCATGTGGGA AGTTCTTTTA TGGGGTTCAA TTGCTCAAGG ATTGTTTACG
ACAATTTCTC CAGCACTGGT GCAGCCGTTT ATGAAGAAAG CTTCAGGCAA AGATGATGTT
GCTTTAGGAC ATCCTGCTGG TACTGGTGTT GCTTTAGGTG CGTTAATTGC AAAGCTTACT
GCTTCAAAAA AGCGTCCTTC TAAGTCAACT GAGGATATTA AATTCCCAGC AGCATTGGGA
TTCTTGCGTG ATACAACAGT TCTTATCACG CTTTCTATGG CTGTTATTTA TATAGTAGTG
GCACTTTTTG CTGGATCTTC GTATGTCGAA ACACATTTAT CTAATAGTCA AAACTTCATT
GTTTTCGTTA TGTTGAAGGC TGCAACTTTT GCTGCAGGTG TTTATATTAT TCTTGCAGGC
GTGCAGATTG TTCTTGACGA AATTGTTCCA GCTTTTAAGG GAATATCGGA AAAGCTTGTT
AAAAATGCGC GTCCTGCTTT AGATGCACCA ATGACTTTTG GCTTTGCTCC TAATGCTGTT
CTTATTGGTT TCTTAGCTAG TTTCTTTGGC GGTTTGCTTG GAATGACGCT TATGGCGATT
TTGGGAACGA CAATTATTAT TCCTGGAATT GTTGCGCATT TCATGGCTGG TGGTGCTGCA
GGAGTATTCG GTAATGGTCA AGGTGGAATA CGTGGTTGCT TGACTGCATC ATTTATTAAT
GGTCTTTTTA TTACTTTCCT TCCGTTGTTC CTTTTGCCAG TGCTTGGCGA TTTGGGAAGC
GCAAATTCTA CATATTCTGA TGCGGATTAT GGTGTATTTG GTGTAATACT TGGTCACGCA
AATATTGTCG GTGGTCGTAC TGTTTTAATT TCTGTAATAC TTATTGCACT AATATTGTTC
TATTCTGTTT CGATATTGAT GAATAAACGC GATTCTAATA ATTTTGAAAA GGTTGAAGAA
ATAAAATAA
|
|---|
| Protein sequence | MDGILSVLLD IFRQPSVIVA LISFIGLAVQ RKKFSDILQG SIRTLVGFLV LAAGSGVITE
ALNPFGKMFQ YAFHVQGVVP NNEAIIGTVL LKYGSESALI FFFGMIVNII LSITSRFKFI
YLTGHVAFYM ASMLAVIFNV AGFSMWEVLL WGSIAQGLFT TISPALVQPF MKKASGKDDV
ALGHPAGTGV ALGALIAKLT ASKKRPSKST EDIKFPAALG FLRDTTVLIT LSMAVIYIVV
ALFAGSSYVE THLSNSQNFI VFVMLKAATF AAGVYIILAG VQIVLDEIVP AFKGISEKLV
KNARPALDAP MTFGFAPNAV LIGFLASFFG GLLGMTLMAI LGTTIIIPGI VAHFMAGGAA
GVFGNGQGGI RGCLTASFIN GLFITFLPLF LLPVLGDLGS ANSTYSDADY GVFGVILGHA
NIVGGRTVLI SVILIALILF YSVSILMNKR DSNNFEKVEE IK
|
|---|
| |