Gene HMPREF0424_0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0612 
Symbol 
ID8709071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp676317 
End bp676898 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content37% 
IMG OID646482721 
Producthypothetical protein 
Protein accessionYP_003373847 
Protein GI283783093 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCAGG AAATTAGCGA ACATGCAGAT AGCATGATTA ATGCTGTAAG CATTAAAAAG 
CATGCTTTAG ATATTACGTC TTTAGTGTTG GTTGCAGTTC TTTTTGCAGC AGGATGTATT 
CTTGACTTTA CTGCTGCAAA AGCACTTTCA ATTGGAAACA TTAAACCAAA CTTTTTAATC 
GCATCATTCT GTCTTGCAAT CTTGCTTGTT CGTCCAAATG TTATTCAGGG CGCGATTATT 
GGTGCTTTGG CTGCAACTTT GATGCAATTT AACGCATCTA TTCCTGGTCT TAATTATGTT 
TGCGATATTC CGGCAGCGAT TGTTATGACT TTGATGATTA TGGCTTATGT TCGCGTTTTC 
CCTAAGGATG CTGCTAGAAA GTTCAGTATT TTCCCACTTA TAGCAACTTT TATAACTACA 
GTTGTTTCTG GTTTAATATT TGCTTCTACT GCATCTTTCT TTGTTCTTCA TTCTCCTAAG 
ACGATTTTTG TTATGCTTCC AATCATTTTT GGAACTGCTG TGTTTAATGC TGTTGTTGTT 
GAAGTGCTTT ACACCCCAAT TCGACTCGTT CTGCATAAGT AA
 
Protein sequence
MNQEISEHAD SMINAVSIKK HALDITSLVL VAVLFAAGCI LDFTAAKALS IGNIKPNFLI 
ASFCLAILLV RPNVIQGAII GALAATLMQF NASIPGLNYV CDIPAAIVMT LMIMAYVRVF 
PKDAARKFSI FPLIATFITT VVSGLIFAST ASFFVLHSPK TIFVMLPIIF GTAVFNAVVV 
EVLYTPIRLV LHK