Gene HMPREF0424_0611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0611 
Symbol 
ID8709601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp675547 
End bp676173 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content38% 
IMG OID646482720 
Producthypothetical protein 
Protein accessionYP_003373846 
Protein GI283783092 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCAAG AAATTAACGA AACCGTTAAG GAAGCTTACA ACAATGGTGC AAACGCAACT 
ACAGATGCTG CAGCTGCAAT GATGCAAAAT GTGAAAGTTA AGAATCACGC ATTAGATATT 
ACTTCACTGG TGTTAGTTGC AGTGCTTTTT GCTGCAGGAT GCATTCTTGA CTTTACTGTT 
GCAAAGTCTC TTTCTATTGG AAATATTCAG CCTGAGTTCG TTATTGCTTC ATTCTGCTTG 
TCGATTTTGC TTGTTAGACC GAAGATTTAC CAGGGTGCTA TTATTGGTGC TTTGGCTGCA 
ACGTTAATTC AATTTAATAC TTCGATTCCG TTCCTTGAGT ATGCTTGTGA TATTCCAGCT 
GCAATCATTA TGACTGCAAT ATTAATTGGT TATATTCGCG TGTTCCCAAA GGATGCAGCT 
CGTAAAGTAA GCGTATTCCC ATTTATTGCT ACTTTCATTA CTACAGTAAT TTCCGGTTGC 
ATTTTTGCTC TTATTGCAGC TTTCTTTATT CTTCACTCTC CAAATATGGT AATGGTTATG 
TTGCCAATTA TTTTGGGAAC TGCAGTATTT AATGCAGTTG TTGTTGAAGT GCTTTACGCT 
CCAATTCGAC TTGTTTTGCA CAAGTAA
 
Protein sequence
MAQEINETVK EAYNNGANAT TDAAAAMMQN VKVKNHALDI TSLVLVAVLF AAGCILDFTV 
AKSLSIGNIQ PEFVIASFCL SILLVRPKIY QGAIIGALAA TLIQFNTSIP FLEYACDIPA 
AIIMTAILIG YIRVFPKDAA RKVSVFPFIA TFITTVISGC IFALIAAFFI LHSPNMVMVM 
LPIILGTAVF NAVVVEVLYA PIRLVLHK