| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0609 |
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| Symbol | |
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| ID | 8710055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 667296 |
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| End bp | 668951 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482718 |
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| Product | alpha amylase, catalytic domain protein |
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| Protein accession | YP_003373844 |
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| Protein GI | 283783090 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCACA GTGCACAATT GCAAGTAAGT GAGCGTAAAA AAAGTAATTA TGCTTGCGAA
TTAATCGATA ATTACAAGCG CAATGTAATG TGCTCTTTTA CTGCAATTGC TGCTGTAGCA
ACAGTATTAA TGTGTATTTT TGCTATTGTC CCAAACTCTT CGGCATTTGC TTCAACTAAA
TCAACAGACG GTCTTCCGCC AAAAGGTGTG ATTGTTACTG CTTTTCAGCA AAATTGGAAA
AGTATTGCAA AAGAGTGTAA GCAAACTTAT GGTCCTGAGG GTGTGAGTTA TGTACAGGTT
TCGCCGCCGC AGGATCATAT TAAAGGTACA GCGTGGTGGA CTTCTTACCA GCCAGTTAGT
TACAATCTAA ATTCAAAGCT TGGCACTGAA GACGAGTTTA AAAATATGAT TACTACTTGC
AAGGCTGCTG GTGTTGGAAT TGTTGTTGAT GCTGTAATTA ATCACACAAC CGGCGATGGT
AATAAAGATA CTGTAGGTGT TGGCGATAGT AAGTATGATG CGGCAAATCA AAGCTATCCG
GATGCTGGTT ACACAAAAGA TGATTTTCAC CAAATAGATA AAGATATTTA CACATATAAA
GATGCGCAAG TCGTTTGGAA TTATCGTTTA GTTGGTTTGC TTGATTTGGA TACTTCTAAG
CCGCATGTGC AAAAAATTCT TGGTAACTAT TTTGCAAAAT TGCTAAAAAT GGGTGTTGCA
GGCTTTAGAG TTGATGCCGC AAAACATATG TGTCCTGAGG ATGTGAAAGG CATAAAAGAA
GCTGCTGCTA AAGCTGCTGG AACGAAGCCT GAAAACATAT GGTGGATGCA AGAAACAATT
GGTTTCCCTG AACAAGATCC TAAAATTCAG CCGGATCAAT ATGTTGGTAC AGGCGAAGTA
GATGAGTTTG AATACTCGTA TCGCTTGCGT AATTATTTCT ATGGTTCAAT TGAGAATTTG
TCTCATATTA CAGATCAGCT TATTCCTAAT AAGAAAGCCG CTATTTTTGT GACTAACTGG
GATACTGAGC GTGACAATTC GACTCGAGTT CTCACTTATA AGGATGGAGC AAAGTACGAG
TTAGCTAATG CTTTTATGCT TGCTTATCCT TATGGAACAC CAAATATTTA TTCTGGATAT
AAGTTCACGC AGCGCGATGA TGGTGCTCCT GGTGCAACTG ATACGCACAT TCCAGATGTA
AAGTGCGGCA AGAATTCAAA GTGGCAATGC GCTCAGCGTT GGACTTCGAT TCGTGGAATG
ATTGGATTCT ATAATGCTGT TAAGGGCACG AAAGTGACTC AATGGCAAGA TGACAACGAT
AATAACATTG CTTTTAGTCG CGAAAACAAG GGATTCTTGG CGATTAACAA TACTGACAAG
CCTAAAAATG TGAGTTATAA AACTGATTTG CCTGATGGTG AGTATTGCAA CGTATATGCT
TCACGTAAAT GCTTTAGCAC AGTTACTGTA AATGGTGGGA AAGTAGAGAC AACTATTCCA
GCTTATTCTG CTATTGCTTT GCATGTTAAG GCTGTAGAGC ATTTTGGAAG TACTTCCACG
TTTAGTACTG TTACGATGAT TGTAATTGTT TTCGCTGTGC TATTGATTGA ACTAGCTTTG
ATTTTGCGCA AAAATAAGGC AGGTTCTAAC AAGTAG
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| Protein sequence | MIHSAQLQVS ERKKSNYACE LIDNYKRNVM CSFTAIAAVA TVLMCIFAIV PNSSAFASTK
STDGLPPKGV IVTAFQQNWK SIAKECKQTY GPEGVSYVQV SPPQDHIKGT AWWTSYQPVS
YNLNSKLGTE DEFKNMITTC KAAGVGIVVD AVINHTTGDG NKDTVGVGDS KYDAANQSYP
DAGYTKDDFH QIDKDIYTYK DAQVVWNYRL VGLLDLDTSK PHVQKILGNY FAKLLKMGVA
GFRVDAAKHM CPEDVKGIKE AAAKAAGTKP ENIWWMQETI GFPEQDPKIQ PDQYVGTGEV
DEFEYSYRLR NYFYGSIENL SHITDQLIPN KKAAIFVTNW DTERDNSTRV LTYKDGAKYE
LANAFMLAYP YGTPNIYSGY KFTQRDDGAP GATDTHIPDV KCGKNSKWQC AQRWTSIRGM
IGFYNAVKGT KVTQWQDDND NNIAFSRENK GFLAINNTDK PKNVSYKTDL PDGEYCNVYA
SRKCFSTVTV NGGKVETTIP AYSAIALHVK AVEHFGSTST FSTVTMIVIV FAVLLIELAL
ILRKNKAGSN K
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