Gene HMPREF0424_0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0604 
Symbol 
ID8709971 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp661697 
End bp662269 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content43% 
IMG OID646482713 
ProductTM2 domain protein 
Protein accessionYP_003373840 
Protein GI283783086 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTATTG TGAGTGATTT AGATAATCAA ACTGGAGATT ACTCCGGCTC TGACGGACAG 
ACTCAGTACG GACAACCACA GTACAATGAT CAGTCCCAGC AGTATAACCA GGCTCAGCCA 
CAATATAACA ACCAATCCCA GTATGGTGCT CAGCATCAGT ACAATGCTCA GCCACAGTAT 
GGTCAGACTC AGTATGATCA GAATTCATAT GCTCAGCCGC AATACAATGC TCAGCCGCAA 
TATGGTCAGT ACTCTCAGTC TACTCCTCAG TACAATCAAG CATCTTCATA CTCTAACTAT 
GGGTCTAATT ATTCATCAAA CACATACAGA AGCTCTCGTA ACAAGATTGC TGCAGGTCTG 
TTAGCCATTT TCTTGGGTGC TTTGGGTGTG CACAATTTCT ATCTTGGTTT TAAAGGCAAG 
GCTGTTGCTC AGCTGCTTAT TTCTATTCTT TCTTTCGGCT TGCTGGCTTT TGTTTCTGGA 
ATTTGGGCAT TTATTGAAGG AATTTGCATT CTTTGCTCTC AGCCTGGTTC TAAGTGGCAT 
AAGGATGCCG ATGGAGCTGA ACTTCAAGAT TAA
 
Protein sequence
MIIVSDLDNQ TGDYSGSDGQ TQYGQPQYND QSQQYNQAQP QYNNQSQYGA QHQYNAQPQY 
GQTQYDQNSY AQPQYNAQPQ YGQYSQSTPQ YNQASSYSNY GSNYSSNTYR SSRNKIAAGL 
LAIFLGALGV HNFYLGFKGK AVAQLLISIL SFGLLAFVSG IWAFIEGICI LCSQPGSKWH 
KDADGAELQD