| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0601 |
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| Symbol | rpsA |
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| ID | 8708946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 659204 |
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| End bp | 660706 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482710 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_003373837 |
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| Protein GI | 283783083 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAGA ATAATAACGA AGTCGCCAAG GTTGCGATTA ATGATATTGG CACCGAAGAA
GACTTCATCA AGGCAGTCGA TTCAACCATC AAGAATTTTG ATGATGGTGA TTTAGTTGAA
GGTACAGTCG TAAAGATTGA TCACGACGAA GTATTGCTGG ACATCGGCTA CAAAACTGAA
GGTGTAATTC CTTCCCGTGA ACTTTCCATC AAAAAAGACG TTGATCCAGA TGATGTTGTC
GAGGTTGGCG ACACCATTGA AGCCCTTGTT GTAACTAAGG AAGACAAGGA AGGACGTCTT
ATTCTCTCCA AGAAGCGTGC ACAGTATGAG CGTGCTTGGG GTGACATCGA GAAGATTAAG
GATGCAGACG GCATCGTTGA AGGTACCGTT ATTGAAGCTG TTAAGGGCGG CTTGATTGTT
GATATCGGTC TTCGCGGCTT CTTGCCAGCT TCCTTGGTTG AGATGCGTCG CGTGCGCGAT
CTTTCTCCAT ACATTGGCCA GAAGATTAAG GCTAAGATTC TCGAGCTCGA TAAGAACCGC
AACAATGTTG TGCTTTCTCG TCGCCAGTTC CTTGAGGAAA CCCAGTCCGA AGTTCGCGAG
ACCTTCCTCT CGCAGCTTAA GAAGGGTCAG ATTCGCGAAG GCGTTGTGTC TTCTATCGTA
AACTTCGGTG CGTTTGTTGA TCTCGGCGGA GTTGACGGTC TCATTCACGT GTCTGAGCTT
TCTTGGAAGC ACATCGATCA CCCATCTGAG GTTGTTAAGG TTGGTGATAA GGTTACCGTT
GAAGTTCTCG ACGTTGATCT CGATCGCGAA CGTATTTCCC TTTCCCTTAA GGCAACTCAG
GAAGATCCAT GGCAGCGCTT CGCTCGCACT CATGTTCCTG GACAGGTCGT TAAGGGCAAG
GTCACAAAGA TTGTTCAGTT CGGTGTGTTC ATCTCCGTTG AAGATGGCAT TGAGGGCTTG
GTTCACATTT CTGAGCTTGC AAACCGTCAC GTAGAGAACC CAGAAACTGT TGTTAAGGGT
GGCGAAGAAG TATTCGTGAA GGTTATCGAC GTTGATCTCG ATCGTCGTCG CATCTCCCTC
TCCTTGAAGC AAGCTACTGA AGCTGTAGAT CCAAATTCTG AAGATTTTGA TCCAGCTCTC
TACGGTATGC CAGCTGAATA TGATGCTGAA GGCAACTACA AGTACCCAGA AGGCTTCGAT
CCAAACACTA ACGAATGGAT GGTCGGTTAC GAGCAGCAGC GCGAAGAGTG GGAAGCTCAG
TATGCTGCAG CACACCAGCT TTGGGAAGAG CACAAGGCAT TCGCTGCTAA GGAACTTGCG
GCTGCAGCTG AATCTGCTGC TGCTGACGGT CAGAGCGAAG AAGCTGAAAA GAAGCCAGCT
AAGGAAGAAA AGAAGGAAGA AGTTGCTTCC AACTATTCTT CTGAAGCAAC TAGTGAAGGT
GCTTTAGCTG ATTCTGATCA GCTCGCAGCT TTGCGTGAAC AGCTTTTGAA CGAAAAGAAG
TAG
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| Protein sequence | MAENNNEVAK VAINDIGTEE DFIKAVDSTI KNFDDGDLVE GTVVKIDHDE VLLDIGYKTE
GVIPSRELSI KKDVDPDDVV EVGDTIEALV VTKEDKEGRL ILSKKRAQYE RAWGDIEKIK
DADGIVEGTV IEAVKGGLIV DIGLRGFLPA SLVEMRRVRD LSPYIGQKIK AKILELDKNR
NNVVLSRRQF LEETQSEVRE TFLSQLKKGQ IREGVVSSIV NFGAFVDLGG VDGLIHVSEL
SWKHIDHPSE VVKVGDKVTV EVLDVDLDRE RISLSLKATQ EDPWQRFART HVPGQVVKGK
VTKIVQFGVF ISVEDGIEGL VHISELANRH VENPETVVKG GEEVFVKVID VDLDRRRISL
SLKQATEAVD PNSEDFDPAL YGMPAEYDAE GNYKYPEGFD PNTNEWMVGY EQQREEWEAQ
YAAAHQLWEE HKAFAAKELA AAAESAAADG QSEEAEKKPA KEEKKEEVAS NYSSEATSEG
ALADSDQLAA LREQLLNEKK
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