Gene HMPREF0424_0599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0599 
Symbol 
ID8708752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp656999 
End bp658051 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content40% 
IMG OID646482708 
Productperiplasmic solute binding family protein 
Protein accessionYP_003373835 
Protein GI283783081 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTACCG TTCTTTGTGC AGTAAAGAAG TTTGGAAAAA CTGCCATAAC ATGCCTTATT 
GCTTCTGCAG TAATACTTGG ATTTGCAGCT TGTGGAAAAA CTGAGGAAAA ACCAAAAGAA 
AAACCAAAAG CTGCAACAAA TATTTCTGTT GTATCCACTG TTGACACCTG GGGTAGCTTA 
GCTCAAGAGA TCGGTGGCTC TGACGTCAAA GTTGAATCAG TTATGACTGG CTCAGATACA 
GACATATCGT CGTTTAAACC TAGCTCAAAA GATTTAAAAA ATATGCAGAA TGCACAAGTA 
TTAGTTACAA ATGGTGCAGG CTACGATGAT TGGGCAAACA AAGTACACCC AGCTAAAGCT 
GAAGTGCTTA GTGCAGCAGG TACTGTAGGA GCACTTAACG GAGACAATCC ATATCTTTGG 
TTTTCTCACG ATGCTAGGGA TGCTATGGCA TCTGCCATGG CTGACACCTT CTCCAAAGTT 
TTGCCATCAA AAAAACAAGC TTTTTCTAAG CGACTAGCAC AATGGCAGGA AAAGGAAAAG 
AAATTAACCA CCTACTTAAG TGATTTCTCT AAAGAAAATG GTAACGCAAA GTATGCTTCT 
ACATCTCCTA TTCTTTTCTG GCTAATGTCT GATGCCAATT TGAAAGATAG CTCACCTAAA 
GAATATGTTG ACGCAGTAAA TAACAATAAT GAACCAGAAC ATTCAAGCGT TGAGGAGTTT 
CAGAAGCTTA TTGAAGGTCG CAAAATTGAT GTGTTGATTA GCGATAGCCA GCAAGGAAAC 
GATGTTCTGA ACTTGCTAAG CGGAATCGCA GGACGCAGCT ACACGTCTAC AGTACGAGTA 
AGCGAACTTA TGCCAAAATA CGCAGAACAG CTTGATAAAT GGATTATGAA GATTTGTGAC 
GACCTACATA ATGCTGTAAA AGCGACAAAG GATATGCGTA AAGACATTGA TGATAAAGAG 
CCTCAAAAAA AGCCAATCAC TGAGAAGCCA CATGTAGCAA AGAATACTAA TCCTAAAAAT 
TCTAACCAAG GTCAGCAAGA TCCAGGTAAG TAA
 
Protein sequence
MRTVLCAVKK FGKTAITCLI ASAVILGFAA CGKTEEKPKE KPKAATNISV VSTVDTWGSL 
AQEIGGSDVK VESVMTGSDT DISSFKPSSK DLKNMQNAQV LVTNGAGYDD WANKVHPAKA 
EVLSAAGTVG ALNGDNPYLW FSHDARDAMA SAMADTFSKV LPSKKQAFSK RLAQWQEKEK 
KLTTYLSDFS KENGNAKYAS TSPILFWLMS DANLKDSSPK EYVDAVNNNN EPEHSSVEEF 
QKLIEGRKID VLISDSQQGN DVLNLLSGIA GRSYTSTVRV SELMPKYAEQ LDKWIMKICD 
DLHNAVKATK DMRKDIDDKE PQKKPITEKP HVAKNTNPKN SNQGQQDPGK