| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0597 |
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| Symbol | glgB |
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| ID | 8709930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 653781 |
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| End bp | 656066 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482706 |
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| Product | 1,4-alpha-glucan branching enzyme |
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| Protein accession | YP_003373833 |
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| Protein GI | 283783079 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.983775 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGTCA GCATGAGTAC AGTTACTAAC ATCAATGAAG ATGCAGTCGC AGTTCCAGTC
CGACAGGATG TATTAGCTGC GGTGAGCAAT GCAGAATATT ACAATCCACA TGAGGTTCTT
GGAGGTCACC TTGGAACTGG CAAAGGTGCC GACACTGTAA CCGTCCGCGT ATTGCGCCCT
ATGGCAAAGA AAGTTGTTAT TCTTACTAAG AACGGTGAAT ACGAAGCTAA ACACGAATAT
AACGGCATCT TTACAGCTGT TATTCCTGCA GTAAAGCATA CAAAAACAAA GTCTTGGTCT
GTTCCTAGTT ATCGCGTTTA CACTGTGGAA ATAGACGGTT CTGAGTCCAC AGATGATGAT
CCTTACCGTT ATTTGCCTCA AGTTGGCGAA CTTGACATGT ACTTATTTGG AGAAGGTCGT
CATGAGCGTC TTTGGGAAGC ATTAGGCGCA CACGTCAAAA CGATAACAGA TTCATGGGGA
CTTATATCTC CTGAAACTGG AAAGATGGTA AAGAAAGTTA CTGGTACTGC TTTCTCAGTG
TGGGCACCAA ATGCTCGTGC AGTACGCGTA GTTGGTAACT TTAATTACTG GAATGGTCGT
CGCCACGCTA TGCGTTCACT CGGCTCTTCT GGCATTTGGG AACTTTTTAT TCCAGGAGTT
ACAGCAGGAG AAGTATATAA GTACGAAATT CTTACACAAT CTGGCAATTG GATTATGAAA
GCCGATCCAA TGGAGCGCTC TCATGAAGTT CCACCAAACA CAGGATCTGT TGTTGTTGAT
TCTGAGTTTA AGTGGCACGA TACTGATTGG ATGGATGAGC GCGCAAAAAC AGATGCTCAC
AATGGTCCAA TAAGCATTTA CGAAGTACAA GCTAACAGCT GGAATCGCGA TTTGGGTAAT
TATCGCGAAC TTGCTGATCA TTTAGTTGAT TATGTGCAAA GAGAAGGCTT TACTCACGTC
GAGTTTATGC CGTTGACACA ATATCCATTC TCTGGATCTT GGGGATATCA AGTAACGGGT
TATTATGCAG TAGATTCTCG CCTTGGCTCC CCTGATGACT TTAAGTACTT GGTAGATAAA
CTCCACAAAG CAGGCATTGG CGTCATTATG GATTGGGTTC CAGCTCACTT CCCTAAGGAT
GACTTTGCAC TCGGTCGTTT TGATGGCACA GCATTATATG AGGATCCTGA TCCTATGCGA
GGTGAGCATC CTGATTGGGG TACTTACATC TTCAACTTTG GTCGTCATGA AGTTCGTAAC
TTCTTGGTTG CTAATGCTTG CTTCTGGCTT GATGAATACC ATGTTGACGC GTTGCGCGTT
GATGCAGTAT CCTCAATGCT TTACTTGGAT TACAGCCGTG AAGCAGGACA GTGGAGACCA
AACATCTACG GCGGACGCGA AAATCTTGAA GCAATTGACT TCATTAAGGA AGCAAACGCA
ACTGCATACA AGAATAATCC TGGCATCATG ATGATTGCTG AGGAATCCAC TGCTTATCAA
GGCGTAACTG CACCAACCGA TATGGGCGGC TTAGGATTCG GCTTGAAGTG GAATATGGGC
TGGATGCACG ACACTTTGCA ATATCTTAAA GAGGAACCAA TTAATCGTCG TTGGCATCAT
AACGAAATTA CATTCTCAAT GGTTTATGCA TACTCTGAGC ATTATGTGTT GCCATTAAGC
CACGATGAAG TTGTGTACGG TAAGGGTTCG TTACTTGGAA AGATGCCAGG AGACGAATGG
CAACAGTTCG CAGGATTACG CGCATTGCTT GCATACCAGT GGTCTCATCC AGGCAAGAAC
CTTCTGTTCA TGGGTGGAGA AATTGGACAG TCCAGCGAAT GGAACTTCAA TACTTCTCTT
AACTGGAATG AGCTGCAATG GCCGTTCCAT CAAGGTGTGC AAAAGCTTGT TGCAGATTTG
AATACTCTGT ATAAGAGCTC TCGCGCATTC TGGAGTCAAG ACTTTACTCC TGATGGTTTC
CAGTGGCTTA CAAGCGACGA TTCCGATCAC AATACTTTAA GCTACATGCG TATTGGCGAC
GACGGAGAAG AAATCGTTGT AGTAGTAAAC TTCTCAGGTC AAGCTTGGCA AGACTATCAG
GTTGCGTTAC CAAAAGACGG ACAGTGGGAA GAGATACTCA CAACTGATGA TGCAAAGTAT
TGCGGATCTA ATATTCACAA CGGCACATTC ACTGCTACTG CTGCAGAGTA TCATTCTCGA
CCATACTCTG CAAGAATCAC TGTTCCAGCG TTAGGTGCGG TATTCTTGAA GCCAGTACAA
CACTGA
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| Protein sequence | MIVSMSTVTN INEDAVAVPV RQDVLAAVSN AEYYNPHEVL GGHLGTGKGA DTVTVRVLRP
MAKKVVILTK NGEYEAKHEY NGIFTAVIPA VKHTKTKSWS VPSYRVYTVE IDGSESTDDD
PYRYLPQVGE LDMYLFGEGR HERLWEALGA HVKTITDSWG LISPETGKMV KKVTGTAFSV
WAPNARAVRV VGNFNYWNGR RHAMRSLGSS GIWELFIPGV TAGEVYKYEI LTQSGNWIMK
ADPMERSHEV PPNTGSVVVD SEFKWHDTDW MDERAKTDAH NGPISIYEVQ ANSWNRDLGN
YRELADHLVD YVQREGFTHV EFMPLTQYPF SGSWGYQVTG YYAVDSRLGS PDDFKYLVDK
LHKAGIGVIM DWVPAHFPKD DFALGRFDGT ALYEDPDPMR GEHPDWGTYI FNFGRHEVRN
FLVANACFWL DEYHVDALRV DAVSSMLYLD YSREAGQWRP NIYGGRENLE AIDFIKEANA
TAYKNNPGIM MIAEESTAYQ GVTAPTDMGG LGFGLKWNMG WMHDTLQYLK EEPINRRWHH
NEITFSMVYA YSEHYVLPLS HDEVVYGKGS LLGKMPGDEW QQFAGLRALL AYQWSHPGKN
LLFMGGEIGQ SSEWNFNTSL NWNELQWPFH QGVQKLVADL NTLYKSSRAF WSQDFTPDGF
QWLTSDDSDH NTLSYMRIGD DGEEIVVVVN FSGQAWQDYQ VALPKDGQWE EILTTDDAKY
CGSNIHNGTF TATAAEYHSR PYSARITVPA LGAVFLKPVQ H
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