| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0582 |
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| Symbol | |
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| ID | 8709314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 633530 |
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| End bp | 634228 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482691 |
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| Product | methyltransferase small domain protein |
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| Protein accession | YP_003373818 |
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| Protein GI | 283783064 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2813] 16S RNA G1207 methylase RsmC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.719477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGTC ATCAACAATT TAAACAATAC GATAAAACCA AATCACCAAA ATCAGAAAAA
ACGCAAAAAA TCAGTGGCGA ACAATACTTT TCTGCAACAC CATCATCTTG CGATGAGCGA
AGAACGTTAC ATGTAACTTT GAGAAATCAT GAAACTGTTG TACAAGTTTC AAACGGAGTA
TTTAGTGCTT CTAAGCTTGA TCTAGGCACG TCTGTGCTAC TAAAACATGC TCCAAAACCA
CCGGAAAATG GCAAATTCCT TGATATTGGA TGCGGATGGG GGCCTATCAG CATTGCAATG
GGCTTAGAAT CTCCAGAAGC TGAGATTGTA GCTGTAGATG TAAATGAGCG CGCGCTAGAG
CTTACTGAGC TAAACGCAAA AAACGCTGGC TTAAAGCATA TTCGCACTTC TTTAGTAGAT
GACGCTTTAA AAGAAAATAA TACTTTGGAA TTTAATAATT TTGATCTCAT ATGGTCCAAT
CCCCCAATTC GCGTTGGAAA AGAAATGCTG CACGACATTT TGATGACTTG GATTCCGCGT
TTAAAAGTAG GAGGAGCAGC TTACTTAGTT GTGCAAAAAA ATCTTGGCTC AGACTCACTT
ATTCCTTGGC TTGCTGAAAA TCTTGGCGAA AACTACATAG TTGAAAAATA TGCAAGTTCT
AAAGGATACC GAATTATAGA AGTAATAAAA ACGAAATAA
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| Protein sequence | MDSHQQFKQY DKTKSPKSEK TQKISGEQYF SATPSSCDER RTLHVTLRNH ETVVQVSNGV
FSASKLDLGT SVLLKHAPKP PENGKFLDIG CGWGPISIAM GLESPEAEIV AVDVNERALE
LTELNAKNAG LKHIRTSLVD DALKENNTLE FNNFDLIWSN PPIRVGKEML HDILMTWIPR
LKVGGAAYLV VQKNLGSDSL IPWLAENLGE NYIVEKYASS KGYRIIEVIK TK
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