| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0581 |
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| Symbol | hrpA |
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| ID | 8709672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 629382 |
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| End bp | 633467 |
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| Gene Length | 4086 bp |
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| Protein Length | 1361 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482690 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_003373817 |
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| Protein GI | 283783063 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCG ACTACCCTGC TGAGCTTCCT ATTTGCGCAG CACACGACGA AATAATAGAA
GCAATTAAGT CTTCACAAGT CGTGATTGTT TCCGGACAGA CTGGCTCCGG TAAAACTACG
CAAATCCCAA AAATGGTGCT TGAGCTTGGA AGAGGCGGAA GAGGTAAGCA AATCGTGCAC
ACTCAGCCTC GCCGTTTAGC TGCACGCACT GTTGCTGAGC GAATCGCAAA CGAAATGGAA
GTAAAACTAG GCGAAGAAAT CGGCTATCAA GTGCGATTTA CCGACGAAAG TTCACCTAAA
ACAAAGCTTC GAATTGTTAC TGACGGTATT TTACTTGCGC AAATTCAGCG AGATCCTCTT
CTTACTAAAT ACGACACGAT TATTATTGAC GAAGCTCACG AACGCAGTCT TAACATTGAC
TTTTTGCTAG GATATTTAAC GACTTTACTT CCGCAAAGAC GCGATTTGAA GCTGATTATT
ACTTCAGCAA CAATAGATTC TGCAAAATTC CGTGAACATT TTGAGCAAGC TTTACACACA
AAAGTTCCTG TTATTGAAGT TTCTGGACGC ACTTACCCTG TGCGAGTTCT TTATGAACCA
CTTGGATCCG CTCCTTCACT TATGCAACAC GTCCCCGGCT TTGCAGACAT AACAATGGAT
GAGGAAACTG TTGCAGAAAG CCAATCTAAC GAAAGCAATC GAGACGATAT TACAGATGAA
GATATGACAT CTGCAGTAAC TCGCGCATGT GCTCAATTAG TGATTCATTC AAACCACGAG
CAAGGCGCGC GCGACATTAT GGTTTTCGCT TCTGGCGAGC GCGATATTCG AGAGTTTGAA
GCAGGATTAC GCTCATATTT TGGCACTCGA GCAAGTGATA TGAAGCGAGC TGATGCTATT
GAAATAGTGC CGCTTTTTGC GCGTCTTTCT GCAAAAGATC AGCATCGAGT ATTTGAACAT
CACTCTCATC AACGCATTGT TATTGCTACG AACGTTGCTG AAACTTCGCT TACTGTTCCT
GGGATTCGAT ACGTTGTCGA TCCTGGTTTT GCGAGAATTA GCAGATATTC TAAGTCTGCA
AAAGTGCAAA GACTTCCTAT AGAGCCAATT TCTCAAGCGA GCGCAAATCA GCGTTCTGGG
CGATGCGGAC GAATCGCGGA CGGAATTGCT ATTAGACTTT ACTCGCGCGA AGATTACGAA
ACTCGCCCTC GTTTTACCGA TCCTGAAATT TTGCGCACTT CTCTTGGTGC AGTAGTTTTG
CATATGCTTT CGGTTGGTGT TGCTAAAACT GGCGAAGATA TTACTAATTT TGGTTTTATT
GATCCGCCAG ACATAAAAGC TGTAAGCGAT GGCTTTAATG AGCTTAACGA GCTTGGCGCA
ATAAGTAGAA AAACAGGTTT CATCACTTTA ACTCATATTG GCCGCGAGCT TTCTAAATTG
CCGATTGACA TTCGTTTAGG ACGCATGATT ATTGAAGCGG CGCGTAAAAC AACTCCGAAT
ACTCTTGCAG CTGTGCTGGT AATTGTTGCG TTTTTGAGTT TGCAAGATCC TCGCGAGCGT
CCTGAAGAAC AGCGTGAAGA AGCGAATAGA CTTCATAATC GTTATGCGGA TGAAACAAGC
GATTTCTTAA CTGCTTTAAA TATTTGGGAT TATATTTTCC AAGCAGACGG AAATATGAGC
AATAATGCTC TTCGCAAACT TTGTAAAGCG GAATTCTTCC ACTTTTTGCG TTTAAAACAG
TGGAAAGATT TAGTTAATCA ACTTCAAGAC TTGTGTAAAG AGTTGCATTA TAAAGTTGGC
GAGCCTATTC CATCTAAAAG AGTATCTTTG GAAATTCGTC AGCTTCCTAA TAATCAACAG
GCTGCTCACA GCTTGTGCTG CTCTTGGGAT TCGCAAGGAA TACACTCGTC GATGCTTGCA
GGATTGCTTT CTATGTTGGG AATGCAAGTA GTGCGTGAAC CAAAAGCTTC AGATTTTGCT
AATTTGCATG GATCAGCAAA AATTCGAGCT ATGAAACGCG CTCAAAAAAT GGCTAAAAAC
GACTATCAAG GCGCACGCGG AGGAAGATTC GCAATATTCC CAGCTTCATC TGTTTCGAAA
ACAACTCCTT CATGGGTTAT GTGTACGCAA TTAGTTGAAA CATCTAGACT TTGGGCAAGA
TATTGCGCAC AAGTCGATCC TGCTTGGGCC GAGCCTCTTG CTAAAAATCT TACTAGAATC
ACGTATTCTG ACGCTCATTG GAGTGCTTCT AAAGGTGCTG CTGTAGCAAA ATCTAAAGTA
TTACTATACG GATTGCCTAT TGTTCAAGAT CGTACAGTTC AATGGACTAG AGTTAATCCT
TACGAAGCTC GTATGATTAT GATTCGTCAA GGCTTAGTTG AAGCAGATGT GCAACAGCGT
TTTGCACACG ATGAGTTTAT TGTAAATAAT CACAATGTGC TTGAAGATGC AGATAATCAA
GCAAATCGCA CTCGTCAAAT AAGCGAAACT GTAAACGACG AAGATTTATT TACTTTTTAC
GACACTCGCA TTCCTCAAGA AGCAACTACT ATTGCAGCTC TTGCAAAATG GTGGAAAGAT
AACCGCGAAG AAAATCCACA CAAGTTAGAC TTTAATCCCG ATGAAGTTGA ACGTTTACAA
ACTACGCAAA GTACTGATTT AGCTGACTAT CCTGACCATT GGGATACAGT TGGTACAGAT
GGTCAGATTA TAAGGTTGCG TTTAAGTTAT GTGTATGATC CGGCTAATCC TTTGGACGGC
GTAACTGTGC ATGTGCCGCT TTACGTACTT TCGCGCTTAA CTCCTGAAGA ATTTACTTGG
AATGTTCCAG GTTTATTAGA TGAGCTTATT ATTGGCATGA TTAAATCTTT GCCTAAAGCT
CTACGAGTAC AGTTTGTTCC AGCTCCTGAT ACTGCTCAAA AAATTCGCTC TTGGATTGAC
GAACATTACG ACGAGCTTCC TGGGACTGGA GAAACAGAAA GCAATATAAA AAGCGAATGG
CAAGATTTTA GAGAAGTTTT CACTAAAGCT GCAATTTGTG TAGTTGGAGC GCAAATACAT
CCTGAAGTTT TCGACGAGGA GCAAATAAGC AGACTCTCAC CATACTTGCG CATGACGTTT
AGTGTTGAAG AGAGAAAAGC TAACGAAAAT CGCAATAAAC CTGCAGGTCG TAACAAGTAC
TCTAATCGCG TAAAACCTAC TATTCTTGGA ACCGACAAAT CATTAATTGC ATTGCAACAG
CGTTTTGCAA AAGAAGCACA AGAATCTGCA CGAGAAGTTG TAAATTTCAA AGCAAATAAA
GCTGCACAAG CTGGAAATGT AATTGAACGA GCAGATTTAT TACACAAATC TGGTGCTACA
AATCTTTCGC GCGCACAAAT GGTTTGGCAA AGTGCATTGA ATATGCTGCA TTTAGACAAT
AAGCGTATTA CTTCTCGCTG GCTTGGCGCT GAATCTTTAA TGCTCGCAGC TGCACCTTAT
TCAACTTCTA ACGCTTTAGC AGAAGACTTG CAAATGGCTG CAGTAAAACG ACTAATTGCG
GACACAGATA ATATTACTGA CGACAATTTA TTACGCGAAA CTGTTGCAAA CGTATCTGAA
ATATACGAGG ACACAGTATA CGATATAGCG CACGATGTAA TCGCAATATT GAAGCGTCAA
GCAGAATCAA GTAAAGCTGT TTCTGGCAAG ACTGATTTGC CGTTGCTTTC AGTGTTGCAA
TCAATCCGCG AACACACTGC AAGTCTTGTA TACGGAGGGT TTATTGCCAA AACTCCATCT
GATTCTCTGC CTCGTATTGA ACGCTACTTG CATGCAGACG TGATTCGTCT TACTAAAGCT
AAGGCAGACA AAAACCGTGA CGTACGTTGG GCTTGGCAGG CAGATGAAGC ACATAAGCTT
GTAGTAAAAG CTCAAGAAGA CGCTCAGAAA ATCCCATCAG GACCAGCACA TGACGAGTCA
CAAATAATCG CTGAGAAATT ACGTTGGATG TGCGAAGAAT TCTATGTATC TCTTTGGGCG
CAAGAATTGG GAACTGCATA TCCGATTAGC ATACAACGCA TGCGAAAGAT GATTGGCGGA
AGGTGA
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| Protein sequence | MKFDYPAELP ICAAHDEIIE AIKSSQVVIV SGQTGSGKTT QIPKMVLELG RGGRGKQIVH
TQPRRLAART VAERIANEME VKLGEEIGYQ VRFTDESSPK TKLRIVTDGI LLAQIQRDPL
LTKYDTIIID EAHERSLNID FLLGYLTTLL PQRRDLKLII TSATIDSAKF REHFEQALHT
KVPVIEVSGR TYPVRVLYEP LGSAPSLMQH VPGFADITMD EETVAESQSN ESNRDDITDE
DMTSAVTRAC AQLVIHSNHE QGARDIMVFA SGERDIREFE AGLRSYFGTR ASDMKRADAI
EIVPLFARLS AKDQHRVFEH HSHQRIVIAT NVAETSLTVP GIRYVVDPGF ARISRYSKSA
KVQRLPIEPI SQASANQRSG RCGRIADGIA IRLYSREDYE TRPRFTDPEI LRTSLGAVVL
HMLSVGVAKT GEDITNFGFI DPPDIKAVSD GFNELNELGA ISRKTGFITL THIGRELSKL
PIDIRLGRMI IEAARKTTPN TLAAVLVIVA FLSLQDPRER PEEQREEANR LHNRYADETS
DFLTALNIWD YIFQADGNMS NNALRKLCKA EFFHFLRLKQ WKDLVNQLQD LCKELHYKVG
EPIPSKRVSL EIRQLPNNQQ AAHSLCCSWD SQGIHSSMLA GLLSMLGMQV VREPKASDFA
NLHGSAKIRA MKRAQKMAKN DYQGARGGRF AIFPASSVSK TTPSWVMCTQ LVETSRLWAR
YCAQVDPAWA EPLAKNLTRI TYSDAHWSAS KGAAVAKSKV LLYGLPIVQD RTVQWTRVNP
YEARMIMIRQ GLVEADVQQR FAHDEFIVNN HNVLEDADNQ ANRTRQISET VNDEDLFTFY
DTRIPQEATT IAALAKWWKD NREENPHKLD FNPDEVERLQ TTQSTDLADY PDHWDTVGTD
GQIIRLRLSY VYDPANPLDG VTVHVPLYVL SRLTPEEFTW NVPGLLDELI IGMIKSLPKA
LRVQFVPAPD TAQKIRSWID EHYDELPGTG ETESNIKSEW QDFREVFTKA AICVVGAQIH
PEVFDEEQIS RLSPYLRMTF SVEERKANEN RNKPAGRNKY SNRVKPTILG TDKSLIALQQ
RFAKEAQESA REVVNFKANK AAQAGNVIER ADLLHKSGAT NLSRAQMVWQ SALNMLHLDN
KRITSRWLGA ESLMLAAAPY STSNALAEDL QMAAVKRLIA DTDNITDDNL LRETVANVSE
IYEDTVYDIA HDVIAILKRQ AESSKAVSGK TDLPLLSVLQ SIREHTASLV YGGFIAKTPS
DSLPRIERYL HADVIRLTKA KADKNRDVRW AWQADEAHKL VVKAQEDAQK IPSGPAHDES
QIIAEKLRWM CEEFYVSLWA QELGTAYPIS IQRMRKMIGG R
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