| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0568 |
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| Symbol | |
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| ID | 8709301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 613482 |
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| End bp | 616082 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482677 |
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| Product | E1-E2 ATPase |
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| Protein accession | YP_003373804 |
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| Protein GI | 283783050 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0209205 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAATA ACGAACAAAA CGCAATGGCA TCTACAGAAA TCAGCAAAAA TAACGCTATT
GCGGTGCTTC CTAAAGTAGA AGTTTCTGGT TTGAGCACAG AAGAAGTTGC GCAGGCAGTC
TCTTGCGGAG ATGTGAATAT TACTTCTAAG CAGACTTCTC GCTCTTTAAT GGATATTGTG
CGCGCGAACG TGTTTACATT GTTTAACGCG ATTATTTTCA CAGCAATGGT TGTTGTGCTT
GCCACTGGTT CGTGGAAGGA TGCTGTTTTT GGTGTGGTAA TTCTGGTAAA TACTGGAATT
GGCATTGTGA CTGAATTAAA AGCAAAGCGC ACTTTGGATA GGCTTTCTAT ACTTGTGGCG
TCTTACGCAA TGGTGCGTAG AGGTGGAAAA AATATTGAGA TTCCGCACAA AGATATTGTG
CTTGGGGATG TTTTGTGGCT TAGAGCTGGC GAGCAGGTTC CAGCGGATGT AGAAGTGTTG
GAATCGTGGG GTTTGGAAAT GGATGAGTCC ATGCTCACGG GCGAGTCTGC TACAGTTCGA
AAAGCAAAAG GTGATAACGT TTATTCCGGA TCTACTGCAG TTTCTGGAAT GGCTTTAACG
CGTGTTACTG CCGTAGGAGA GCACAGTTAT GCGGCAAAAT TGGCGGCGCA AGCGAAAGTT
TATACCAAAA CAATTTCCGA CTTAAGCCGT GGAATTAACA CGATTTTGAA GTATATGACG
ATGGTTGTGG TGCCTTTGTG TGTGCTGCTT GTGTGGTCGC AAATGCACAA GGTTGGCGGA
TTTGTTGAAG CTTGGCAGAC TGGTGCTTGG AGGGGAGCTG TTGTTTCTGC TGTTGCAGGC
GTTGTTGGCA TGATTCCAGA AGGATTGGTT CTTCTTACTT CGCTTAATTT TGCGGTGGCT
GCTATGCGGC TTGCTCGTAA GCAAACGTTA GTTCAGGAGT TGGAATCTGT AGAAACTTTA
GCGCGCGTAG ACTGCTTGAA TCTGGACAAA ACTGGCACTA TAACCGACGG TGGTATTGCA
TTCGTTGGCG TGGAAAATCT AGATAATAGT GGTGCCGAAA TATCTTTGCA GACCAACTTG
CAAACCAATC AAGCTTTATT CGACTTATCA AATGAAGAAA ATCCGAACGC AACAGGTGTT
GCGATTATGG AAGGGCTTGG CTCTAAAGGA GTTGCAGCTA GCCAGCATGT ATCTAACCGT
CTTCCATTCT CTTCTGCTAG AAAGTGGAGT GCTGTGCAAT ATGTACAAAG CAGTGGAGAG
CGTGCAACTT GGTATATGGG TGCTCCGGAA GTGTTGCTCA GCGCGATTGA TTATGCAAAT
ACTAATGAAC TTTTAGCGAA AGTTAATTCT TATGCGGAGC TTGGTGAGCG CGTGCTGCTG
CTTGCAAAAG TAAGTAGCGA TAGTAGCAGC GTAAGTAGCG TAACAGAAAC AGATAAAACT
TTTGGTGATT CTCCAACTAT TTGCGTAAAT GCTCATCCTA TTGCTTTAGT TCGCTGCTCT
GAGCGTATTC GTGATGATGC TCGCAAAACG CTTAAATGGT TCCGTGAGCA GGGTGTGCGT
TGCCGCGTAA TTTCGGGAGA TAACCCTACA ACAGTTGCGG CTGTTGCTGC AAAAGTTGGC
TTAACAGGAG ATCGCAAGCC TGCTGCAATG GACGCTAGAA AATTGCCAGA AGATATTAAC
GAATTGGCTA AAGTGCTTGA AAATGTGGAT GTGCTTGGGC GCGTGCTTCC TCATCAAAAG
AAAGCGATTG TTCAGGCGCT TCACACTCAA GGTCATGTTG TTGCTATGAC TGGTGATGGC
GTGAACGATA CTTTGGCTCT TAAAGAAGCT GATTTGGGCG TTGCTATGGG CAATGCTGCT
CCTGCTGCAA AAGCTGTAGC TCAAGTGGTT CTTGTTGATT CACGATTCTC GCATTTGCCG
GATGTTGTGG CTCGCGGTAG GCAAGTGATG GCAAATATGG AACGTGTGGC TGGCTTATTC
CTTGTAAAAA CTGTTTATTC TGCGCTTATT TCTGCAGGAG TTGTGCTTCT AGCGTTGCAC
TTCCCGTATT TGCCTCGTCA CATTACTTAT ATTGGTTCTT TAACTATTGG TATTCCAGCA
TTTTTGCTCG CTTTAGCACC TAATACTCGT CGATACATTC CAGGTTTCTT GAAGCGAGTT
GTTCGTTTTG CTGTTCCTAG CGGATTTGCT ATAGCTGCTT CTGTGCTCGC TACTGCTGTT
ATAGCTCCGC GAGTTTTGGG ATTAAATCTT GACGATGTTG TTGCAAATAA TTTGATAGCA
TCTCGTTTTA TTGTCTCAAA CGTGCAAGCT TTGGTAACTA CTCGCAGTAT TTGTTCCGTA
ATCGTATTTG TTCTCGGCAT ACTCGTGCTT GCAAGCGTTG CCAAGCCGTT GCGCTCGTGG
AGAGGAATTA TGGTTGCGCT ATTTGCTGCA GCTGGAGTTG CTGGAGCTTT TATACCGTTT
ACTGCAAAAT TCTTCGAAAT TCACGTGCCG ACTGCAGGAA GCGCGTTTAC TGTAATGCTT
ATAGCTGTTG TTTTAGCTGT AATCTTATGG TTTGTGTGCG TGAGTTTAGC AAACTTGTTA
TCTAAACAAA GTAAGAAGTG A
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| Protein sequence | MTNNEQNAMA STEISKNNAI AVLPKVEVSG LSTEEVAQAV SCGDVNITSK QTSRSLMDIV
RANVFTLFNA IIFTAMVVVL ATGSWKDAVF GVVILVNTGI GIVTELKAKR TLDRLSILVA
SYAMVRRGGK NIEIPHKDIV LGDVLWLRAG EQVPADVEVL ESWGLEMDES MLTGESATVR
KAKGDNVYSG STAVSGMALT RVTAVGEHSY AAKLAAQAKV YTKTISDLSR GINTILKYMT
MVVVPLCVLL VWSQMHKVGG FVEAWQTGAW RGAVVSAVAG VVGMIPEGLV LLTSLNFAVA
AMRLARKQTL VQELESVETL ARVDCLNLDK TGTITDGGIA FVGVENLDNS GAEISLQTNL
QTNQALFDLS NEENPNATGV AIMEGLGSKG VAASQHVSNR LPFSSARKWS AVQYVQSSGE
RATWYMGAPE VLLSAIDYAN TNELLAKVNS YAELGERVLL LAKVSSDSSS VSSVTETDKT
FGDSPTICVN AHPIALVRCS ERIRDDARKT LKWFREQGVR CRVISGDNPT TVAAVAAKVG
LTGDRKPAAM DARKLPEDIN ELAKVLENVD VLGRVLPHQK KAIVQALHTQ GHVVAMTGDG
VNDTLALKEA DLGVAMGNAA PAAKAVAQVV LVDSRFSHLP DVVARGRQVM ANMERVAGLF
LVKTVYSALI SAGVVLLALH FPYLPRHITY IGSLTIGIPA FLLALAPNTR RYIPGFLKRV
VRFAVPSGFA IAASVLATAV IAPRVLGLNL DDVVANNLIA SRFIVSNVQA LVTTRSICSV
IVFVLGILVL ASVAKPLRSW RGIMVALFAA AGVAGAFIPF TAKFFEIHVP TAGSAFTVML
IAVVLAVILW FVCVSLANLL SKQSKK
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