Gene HMPREF0424_0564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0564 
Symbol 
ID8709640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp610514 
End bp610957 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content41% 
IMG OID646482674 
Producttoxin-antitoxin system, antitoxin component, HicB family 
Protein accessionYP_003373801 
Protein GI283783047 
COG category[S] Function unknown 
COG ID[COG1598] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00598996 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTAAAA CAAATAAATC TAGCAAAAAT ATCTCTCACA AAAATAAGTC CAAAACACTA 
ACAAATAAAA GACTCAGCTA CTACATGTCA CTCCCATACA AGCTGGAAAT TGTAAAAGAT
CCGGATGAAG GTGGATTTGT GTCCTACTAC CCTGATTTGC CAGGATGCAT AAGTTCAGGA
GACTCCGAAC AGGAAGCAGC AGCAAATGCG CAGGACGCTA AGCATGCTTG GTTTGAAGCA
GCTCTTGAAA GCAAAATCAA CATAAAAGAG CCGTCTTACC ATGAGCTGAA TGACTATTCT
GGTCAATTCA AACTGCGTCT ACCTAAAGAA TTACACAGGC AATTGGCTGA GCAATCTCAA
GCCGAAGGAA TAAGCATGAA CCAGTATTGC GTGTATCTTC TTTCGCAAAA TAACGCTATT
GAACGCGTGC TTGAGCGAGC ATAG
 
Protein sequence
MTKTNKSSKN ISHKNKSKTL TNKRLSYYMS LPYKLEIVKD PDEGGFVSYY PDLPGCISSG 
DSEQEAAANA QDAKHAWFEA ALESKINIKE PSYHELNDYS GQFKLRLPKE LHRQLAEQSQ
AEGISMNQYC VYLLSQNNAI ERVLERA