| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0543 |
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| Symbol | |
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| ID | 8709385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 581409 |
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| End bp | 582671 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 646482654 |
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| Product | YcaO-like protein |
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| Protein accession | YP_003373781 |
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| Protein GI | 283783027 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1944] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000210818 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTTAATT TTGTTTCACC TGAACGAGAA TTTACATTGA TGGATTCTTT GTCATCAATT
ATTGAGGTAT TTGCCTTAAA GAAGTGGCAA TGGAGTGTTG AAGTATCGCA ATGGAGTGTT
GAAGTATCAG CATTAGACAC TACTTGTATT TTGGATTCGT GTGTTTATTT AGATGAGGCT
GATTGTGCAG ATATTGTTTT AGAATCCGCT AGAGGTAAAG GTCTTGGGCT TGAATCTCTA
ACTAGCGGTT TATATGAATT ATTGGAACAT ATAGTATATT CGAATCAGTC TGTTTTGTAT
TCTTGTTCAT CATCTCTTCG AATAAAAGGA GATGCGATTC TTAATCTTTC TAATTCAGCA
AGCAAAAATA CTGATTATAC TTTTTATAGT ATGAGTGATA ATGCTATTGC TTCGTTACCA
CCAGAATACT GCGGTGGAAA GTCTACTGGT GAGTTTTCTT CTATTGATGA AAATTTAATT
CGTTGCTACT ATACAAATAA TGGATGGGCC GCAGGCACTT CTATCCAAGA AGCGACTTTG
CATGCGCTTA ATGAACTTAT TGAACGAGAT GCAACATCTA ATATTCTTCT TTCTAATATA
TTTGATGATG TATGCGTAGA GTTTTTAATT CCTAATTGTG AATTATTGAA AGAAATAAAA
CAGGCTATTG AGAGCGCAAC TGGTAACAAG GTGTATATTG TATCGATTCC AGCTTTGTCT
GGCTCAGTGG TGCTATCTAT ATGTTATAAG ACAGATAGAG AAGAAATTCC TACTTTTGGA
TGTGGCGCAT CGCAATTTTT AGGATACGCA ACATATCGTT CGCTTCTTGA GTTATGGCAA
GAGTTATGTG CAGATAAAGA TTATTCTAAT CCTGAAGAAC GTGATAGATC CAAAAGACTA
AACCATCTTG TACATTCATA TCCAAATATT AAGAAAGCTC TATTCTTAGA AAAAATTAGA
CAGGATAGTA GGAAATTTTC ACAAAAATTA GTGTCATATG ATATATGTGA CACTTTATCT
ATTCCTAACA TAGGAATTCA GATAAATAAT ATAGTAAACG ATCTTCATAA GTACGGAATA
GATATATGGA AACGTGACGC ATTCCACTAT GAGCGTAAAT CGATGAAATG CAATCCTAGT
GTTGTGCAAA TTGTCGCACC AGGATTGGAA CGTTTTCATG TTATTCGTCA TGGTTTTCCT
GCTGAACTTA TAGGTCGTCT AAGAAAACGT AAATCAATAA TGTTGATTCG TCAACACAAT
TAA
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| Protein sequence | MVNFVSPERE FTLMDSLSSI IEVFALKKWQ WSVEVSQWSV EVSALDTTCI LDSCVYLDEA
DCADIVLESA RGKGLGLESL TSGLYELLEH IVYSNQSVLY SCSSSLRIKG DAILNLSNSA
SKNTDYTFYS MSDNAIASLP PEYCGGKSTG EFSSIDENLI RCYYTNNGWA AGTSIQEATL
HALNELIERD ATSNILLSNI FDDVCVEFLI PNCELLKEIK QAIESATGNK VYIVSIPALS
GSVVLSICYK TDREEIPTFG CGASQFLGYA TYRSLLELWQ ELCADKDYSN PEERDRSKRL
NHLVHSYPNI KKALFLEKIR QDSRKFSQKL VSYDICDTLS IPNIGIQINN IVNDLHKYGI
DIWKRDAFHY ERKSMKCNPS VVQIVAPGLE RFHVIRHGFP AELIGRLRKR KSIMLIRQHN
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