| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0536 |
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| Symbol | |
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| ID | 8709317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 572994 |
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| End bp | 574955 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 646482649 |
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| Product | ATPase family associated with various cellular activities (AAA) |
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| Protein accession | YP_003373776 |
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| Protein GI | 283783022 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1401] GTPase subunit of restriction endonuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000638897 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAGAC CAGATAATAT GTCCGCTTAT AGTGCATTGG ATTTAAAGCT TGGTATTAAA
TCTTCGCTCC CACATGTTAA GAGTGCTGTC GCGCTAATAC TTTTGTTTTG GGAGTGCTCT
ATTAAGTCTG CTGAGCTTCA GTATTCCGTG CAAAGTGAAG ACAAAATAGT AATTAATCCA
AATTTGAAAA CTGCTATTAA AAATAAACTA GCACAAATTT GTAAACAAGA TGGTATTAAC
ATTGATACAG TAATAGATGC TATAAATAAT AATTCACTAT TTAAGTCTCA AATGGAATCG
CTAATAGTAG CCTTTGAGCT AATTTGGAAG TTAGCAAAAA TCAGCTTTAT TGATGAAGAT
AAAACTACTA GTGCAGAAAG GACAGGTGGA ATAAGGTATC CCAAAAAATT AATCTATACG
GTTAATGCTG ACATTATCGA TACTCTAATT GACAATGATT GGGATGCTTA TGTACGTATT
TTGATTTTGT GGATTGGTGT TGATATTAAT TATGATAAGC AGATAGAGAC TCGATTGAGT
CGCTTGTTAA CTGCAATATC TGAAGGCGCA ATCTTTAAAT TAGTTGATGG TACTAATGAT
GTTATTTTTA ATCAAAACGA CGTGTATAAG AAACTAATGC AAACTAAAAA TAATGTAGAC
TTAAATGGAG ATGAAGAAGC TAAAGGTTCT TTAAGAATAC TTAAATCTCT GCTTTCGGAT
GGACTGAACC CATACCTTGA GTGCCGTAAT GGAGATGTTC AGATATTAAA AGGTCAGTTT
AATAATCTAG AGGAATATCA AAAAAGAGTA GAAACCTTTC TGCAGCTATC AACCACAAAA
ATAATAGACT CCGAGGATGT AAATATAGAT AAAGAGACCG ATAGACAAGA TTCGCTTGAA
AATAATCGCG TTGTAAGTGG GCGTAATATT CTTCTATATG GTGTTCCGGG TTCTGGTAAG
AGTTGGACTA TTGAGCATGA ATATTGCAAA CCTGGAAGTG TTGTAGAAAG ACTTGTATTT
CATCCTGACT ACACTTATTC AGATTTCATT GGACAGATTC TTCCAGCAGT TTCAGATGAT
GGACAGGTAA GTTATAAGTT TACTCCTGGA CCTTTTACGA ATATCCTTCG TGAATCATAT
AACAATCCGA GCAAGGAGTA CATCCTTATT ATTGAGGAAA TTAATCGTGG TAACGCTCCT
GCTATCTTCG GAGAAGTGTT CCAGTTGCTT GACCGTAAAG TAGAAATTCG TGATATTGAT
GACAACGGAT ATCCCATCGG TACAAGTGAG TACGGTATTA CAAATATGAA TATTGCTGAG
GAGATGTACG GCAAGGATAG AAAAACAGAA AAGGTTCGTA TTCCTTCAAA CCTTTCCATC
ATAGGTACGA TGAACACATC AGATCAAAAT GTTTTCACGT TAGATACAGC TTTTCAGCGC
AGATGGGATA TGCGTCTTAT CGAGAACGAT TTTGCCAGTG TTGACAGTTC GCTTGCTGAT
GCAGAAATCC TTGACACTGG AATAACATGG AAAAATTTCT GTGTTGAAAT CAATAAGATT
GTTGTTGAGA ATAGTGCAAG GATGACTTCT GCGGAGGATA AGAGGCTTGG AGCATACTTT
GTTCATGTTC ATGACCTTAA ATACGATGAC ACTATGGGAG CTCTGAAAGA ATACGATGCT
CTTCGTATGA AAGAAACCAG TGGTTCCCTT ACAGATGATG AGAAGTCCAG AATTGCAGTG
ATTCGTGATG CAATGCGACA AAATAGGAAG TTCCCTGAAA AGGTAATAAA ATATCTTTGG
GATGATGCAT TTAAATTCAA CCGTGAAATT ATCTTTGATG TTGATAAATA TCAAAGTCTT
GAACAAGTAA TACATGCTTT TATGTATGCC AATGGTACTG AGCGCTTTAA GGTGTTTAAA
GATAATGTCA GGGATGCATT TGCTAATGTA GAAGAAGATT AA
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| Protein sequence | MNRPDNMSAY SALDLKLGIK SSLPHVKSAV ALILLFWECS IKSAELQYSV QSEDKIVINP
NLKTAIKNKL AQICKQDGIN IDTVIDAINN NSLFKSQMES LIVAFELIWK LAKISFIDED
KTTSAERTGG IRYPKKLIYT VNADIIDTLI DNDWDAYVRI LILWIGVDIN YDKQIETRLS
RLLTAISEGA IFKLVDGTND VIFNQNDVYK KLMQTKNNVD LNGDEEAKGS LRILKSLLSD
GLNPYLECRN GDVQILKGQF NNLEEYQKRV ETFLQLSTTK IIDSEDVNID KETDRQDSLE
NNRVVSGRNI LLYGVPGSGK SWTIEHEYCK PGSVVERLVF HPDYTYSDFI GQILPAVSDD
GQVSYKFTPG PFTNILRESY NNPSKEYILI IEEINRGNAP AIFGEVFQLL DRKVEIRDID
DNGYPIGTSE YGITNMNIAE EMYGKDRKTE KVRIPSNLSI IGTMNTSDQN VFTLDTAFQR
RWDMRLIEND FASVDSSLAD AEILDTGITW KNFCVEINKI VVENSARMTS AEDKRLGAYF
VHVHDLKYDD TMGALKEYDA LRMKETSGSL TDDEKSRIAV IRDAMRQNRK FPEKVIKYLW
DDAFKFNREI IFDVDKYQSL EQVIHAFMYA NGTERFKVFK DNVRDAFANV EED
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