| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0535 |
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| Symbol | dcm_2 |
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| ID | 8709841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 571928 |
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| End bp | 573001 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 646482648 |
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| Product | DNA (cytosine-5-)-methyltransferase |
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| Protein accession | YP_003373775 |
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| Protein GI | 283783021 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0270] Site-specific DNA methylase |
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| TIGRFAM ID | [TIGR00675] DNA-methyltransferase (dcm) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000373164 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACCAA CGGTAATAGA TTTATTTTCA GGCGTAGGAG GATTATCGTT AGGCTTTGAA
GAAGAAGGAT TCAGTGTTCT TTTAGCTAAT GAGTATGATG AATCCATTGC AAACGCTTAT
ATGAAAAATC ATAAAACAAC AAAAATGGTC GTTGGTGATA TTACCTCTCT TGATTTGGAT
GCTGTTTTTG GAACATATAA AAATAAGATT GACGTCATTA TAGGAGGGCC ACCTTGCCAA
GGCTTTTCGC AAAAAGGTCA GCGGAAAACA ATCTACGATA AAAGAAATTT TTTATTTGAA
TATTATGTAA AGGTAGTTGA GCTTGTAAAA CCTAAGTATT TTGTAATGGA GAATGTCCCA
AACCTGCTTA CTGCTGAAAA AGGTTATTTT TTTAATGAAA TTGAGACGCT ATTTAATGCT
ATGGGGTACT TTTTGCAGCA TGGAGTACTT AATGCCGCGG ATTTTGGAGT ACCACAAAAT
AGAAAAAGAG CAGTTATTAT TGGCAAAATG AATGGGGTTG CTCCGTCTTT ACCATCCTCG
CTGAATGAGA AAGTAACTAT ATGGGACGCA ATTAGCGACT TGGCATTTTT AGAATCAGGA
GAAGGTGATG AGGTGCAAGA ATACAGATAT GCGCCTCAAA GCGAGTATGA AAAAAAATTA
CGTGGACATG CTAACCTTTT GTATAATCAT AAGGCAACAA AACACTCTCC ACTTTCATTA
AAAAGATTGA GAATGATTCC TCCTAATGCC GGTAAAGAAG TTTTACCAAA AGAGCATCTA
ACTAAATCCA TATATAGTGG TACGTGGACC AGGATGAAAA AAGATGATAT ATCCGTCACG
ATAACAACAA GATTTGATAC ACCTTCTTCA GGCAAATTTA CTCATCCTTT TTTAAATCGG
GCAATAACAG TAAGAGAAGC GGCCAGGATA CAGTCATTCC CAGATGAATT CATATTCATT
GGTAGTAAGA GTTCTCAAAT GAGACAAGTT GGTAATGCTG TTCCGCCACT ATTGGCATCA
GCAATCGCTA GAGTAATTAA AAATGATATT ATGGAGGGAA ACATTGATGA ATAG
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| Protein sequence | MQPTVIDLFS GVGGLSLGFE EEGFSVLLAN EYDESIANAY MKNHKTTKMV VGDITSLDLD
AVFGTYKNKI DVIIGGPPCQ GFSQKGQRKT IYDKRNFLFE YYVKVVELVK PKYFVMENVP
NLLTAEKGYF FNEIETLFNA MGYFLQHGVL NAADFGVPQN RKRAVIIGKM NGVAPSLPSS
LNEKVTIWDA ISDLAFLESG EGDEVQEYRY APQSEYEKKL RGHANLLYNH KATKHSPLSL
KRLRMIPPNA GKEVLPKEHL TKSIYSGTWT RMKKDDISVT ITTRFDTPSS GKFTHPFLNR
AITVREAARI QSFPDEFIFI GSKSSQMRQV GNAVPPLLAS AIARVIKNDI MEGNIDE
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