| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0489 |
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| Symbol | |
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| ID | 8708810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 534065 |
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| End bp | 536089 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482603 |
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| Product | putative phosphonate C-P lyase system protein PhnK |
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| Protein accession | YP_003373730 |
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| Protein GI | 283782976 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.31653 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACAA CACGTAAAGA TATAGACATT CGCGCCATGC AGCTAGAGCA AGGGCCATTG
TTGGAAGTAA AAAATCTCCA GGTTGATTTC ACAACAGACT CAAAAAAAGC TGTTCATGCT
GTTAGAGATG CTAGCTTCTG TGTTTATCCT GGTCAGTGGG TTGCAATTGT AGGTGAATCT
GGTTCAGGAA AGTCCACTTC TGCAATGGCT GTTCTTGGTC TTCTTCCTGG AACTGGTCAT
GTTACAGGTG GATCTATTAA GCTCAAGGGT AAAGAAATTA GCAGTTTGAA GCCAAAAGAG
ATTGCTGCTT TGCGTGGTAC TGCAATGGGT CTAGTTCCGC AGGATCCTAT GAGCAACTTG
AACCCTGTGT GGCGTATTGG CGAACAAGTT AAAGAAGCAT TAATCGCAAA TGGTGTTGAC
GTTGATCACG AGAAGCGTTC TTCATTAGCT GAGGCTCTTG CAGGCGATTC TGTTCAAGTC
AAAAGCAATG AGGATGAAAC ATTCCTTGGC TCTAAAGAAT TGCCAGAATT GATTGAAGTT
GCTAAGAAAG CTTTGAAAGA AGTTGGGCTT GATGAGCATA ACGATGCTGA AAAGTTCAAT
GAAGCTATTG ATTACTACAA GAAAGAGTGG GTTCCAGGCT CTGAAACTCG TTGGCGCGTA
GCAGACGATT TAATCAAATA TGGTGTAAAT GACGACAAAG CTTGGGAAAT TGCCAAAAAG
TATGTTGTAG GTGCAAGCGT TGAAGATCGT ATTGCTGGTT TGCTCGATGA AGCTGGTTTG
CCAGATGCTG CAACTCGTGC ACGTCAGTTC CCACATGAGT TTTCCGGTGG TATGCGTCAG
CGCGCTTTGA TTGCTATTGG TTTGGCTTGC CGACCGGACT TGCTTATTGC AGATGAGCCA
ACTTCCGCTT TGGATGTTAC TGTGCAAAAG CGTATTCTTG ACCATTTGCA TACACTAACT
GATTCGCTCG GAACTTCTGT TCTCTTCATT ACACACGATT TAGGTTTGGC TGCCTCTCGC
GCGCAGCATG TTGTTGTTAT GTATAAGGGT CGTGTTGTTG AGTCTGGCCC ATCGTTGGAA
GTTTTGCAGC ATCCTCAGCA TCCGTATACA AAGAGACTTG TTGCTGCCGC TCCAAGCTTA
GCTTCTCAGC GCATTATTTC TGTTAAAGAA CACGGTGGTA ACGCTGATAA CTTGCTTGAG
CATCACGTAG TAGGTGAGCA AACTCTCGAA AAAAGTGAGC ATATTATTAC TGTGGATCAC
TTAACTCGTG AGTTTAAGCT TCCTCGCAAG AAAGAGCTTT TTAAGGCTGT TGACGACGTT
TCATTCTCTA TTAAGCGTGG TACGACGTTA GCTATCGTTG GTGAATCTGG TTCAGGTAAA
TCTACCGTTG CGAATATGGT TTTGCGACTT CTTAAGCCAA CAAGTGGAAC TGTTACTTAC
GAAGGTAAGA ATATTTCCGA TTTAAAGGGT GCGGATTTGC TTGACTTCCG TCGCCATGTG
CAGCCAGTTT TCCAGAATCC GTATGGTTCT TTGGATCCTA TGTACTCAAT TTATCGTTCA
ATTGAAGAAC CTTTGCGTAT TCATAAGATT GGTGATAAAA AGAGTCGTAA AAACCGTGTG
GTAGAGCTTC TAGACATGGT TCGTATGCCT GCTTCAGTTA TGACTCGATT CCCGAACGAA
CTTTCTGGAG GACAGCGTCA ACGAATTGCG ATTGCTCGTG CTATGGCTTT GGACCCAGAT
GTTATAGTTT GCGATGAAGC TGTATCTGCT TTGGATGTGC TTGTGCAAGA TCAGGTTTTG
CACTTGCTTA ACGATTTGCA GGCGGAGCGT GGTTTGAGCT ATTTGTTCAT CACACACGAT
TTGGCTGTCG TTCGTCAGAT TGCAGACGAA GTTGTTGTTA TGCAGCATGG AAAGCTTGTT
GAGCATGCAA CTACAGATGA GGTATTCAAT CATCCACAGA TGGAATACAC TCGCGATTTG
CTTGATGCAA TTCCAGGAGG AAATTTGGAA CTTGGTTTAG ACTAA
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| Protein sequence | MNTTRKDIDI RAMQLEQGPL LEVKNLQVDF TTDSKKAVHA VRDASFCVYP GQWVAIVGES
GSGKSTSAMA VLGLLPGTGH VTGGSIKLKG KEISSLKPKE IAALRGTAMG LVPQDPMSNL
NPVWRIGEQV KEALIANGVD VDHEKRSSLA EALAGDSVQV KSNEDETFLG SKELPELIEV
AKKALKEVGL DEHNDAEKFN EAIDYYKKEW VPGSETRWRV ADDLIKYGVN DDKAWEIAKK
YVVGASVEDR IAGLLDEAGL PDAATRARQF PHEFSGGMRQ RALIAIGLAC RPDLLIADEP
TSALDVTVQK RILDHLHTLT DSLGTSVLFI THDLGLAASR AQHVVVMYKG RVVESGPSLE
VLQHPQHPYT KRLVAAAPSL ASQRIISVKE HGGNADNLLE HHVVGEQTLE KSEHIITVDH
LTREFKLPRK KELFKAVDDV SFSIKRGTTL AIVGESGSGK STVANMVLRL LKPTSGTVTY
EGKNISDLKG ADLLDFRRHV QPVFQNPYGS LDPMYSIYRS IEEPLRIHKI GDKKSRKNRV
VELLDMVRMP ASVMTRFPNE LSGGQRQRIA IARAMALDPD VIVCDEAVSA LDVLVQDQVL
HLLNDLQAER GLSYLFITHD LAVVRQIADE VVVMQHGKLV EHATTDEVFN HPQMEYTRDL
LDAIPGGNLE LGLD
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