| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0485 |
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| Symbol | xerC |
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| ID | 8709539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 528924 |
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| End bp | 529892 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482599 |
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| Product | site-specific tyrosine recombinase XerC |
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| Protein accession | YP_003373726 |
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| Protein GI | 283782972 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.853028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACA ATAAATTTGT TTCTGAAAAT TTCTTAGGCT TACCTTCTAA ATATATGAGT
TTAATAGATG ATTATATTGA TTATGTTCGT GCTAATAAAG GCTTGGGTGA ACGCACGCAG
AAAGCTTATG CCAGTGATAT TTTGCAATGT TTAGCATGGT GTAATCGGCA CGGATTTAAT
AATATTTCGG AGCTTACTAC GGATGATTTG CGTTCGTGGA TGGCTGATGA GTCGCGAAGT
CATGCGCGTT CAAGTTTGGC TCGCAAAGTA GTTGCGGTGC GTGGTTTTTT TGCGTGGTGT
CAGCATGTTG AATACATAAG CGGTAATCCT GCAGAAATTT TAATGACGTC AAAAATTAAA
AATATGCTGC CATCTGTTTT GGATGAATAT CAAGCAGAAT CATTAATGAA TAATGTTGAT
TCTAAAGCTA ATGTTTCAAC TTCGTGTCCC AAAAATCAGA AAGCTGTAGG ACTTCGCAAT
GCTGCAATTC TGGAGCTTTT ATATGCGACT GGTATTCGTG TTGGTGAGCT TACTAGTTTA
AATATTCAGG ATATTAATTT TTCCTCGCAC ACTATAAAAG TTACTGGTAA GGGAAATAAG
CAGCGTGTTG TGCCTTTTGG GGTTCCTGCT TATAAAGCTT TATCTGCTTG GATTTCTAAA
GATGGACGAG AAATTTTATT GCGAAATTCT GTTGAAGAGG CAGTATTTCT TGGTACTCGC
GGAAAGCGTA TTGATCAGCG TTTGGTAAGG CAGATTGTGC ATGACGAGGC TAAAAGTGCG
CATGTTCCGG ATATTTCTCC TCATGCTTTG CGGCATAGTG CTGCTACGCA TATGTTGAAT
GGAGGGGCAG ATTTACGCGA AGTGCAGGAA TTATTGGGTC ATTCATCGCT TAATACTACT
CAGCGTTACA CTCATGTTTC TATTGAATCT TTAAAACGTA AGTATTCTCA AGCTTTTCCG
CGTGCATGA
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| Protein sequence | MSNNKFVSEN FLGLPSKYMS LIDDYIDYVR ANKGLGERTQ KAYASDILQC LAWCNRHGFN
NISELTTDDL RSWMADESRS HARSSLARKV VAVRGFFAWC QHVEYISGNP AEILMTSKIK
NMLPSVLDEY QAESLMNNVD SKANVSTSCP KNQKAVGLRN AAILELLYAT GIRVGELTSL
NIQDINFSSH TIKVTGKGNK QRVVPFGVPA YKALSAWISK DGREILLRNS VEEAVFLGTR
GKRIDQRLVR QIVHDEAKSA HVPDISPHAL RHSAATHMLN GGADLREVQE LLGHSSLNTT
QRYTHVSIES LKRKYSQAFP RA
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