| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0478 |
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| Symbol | xerD |
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| ID | 8709859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 521895 |
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| End bp | 522854 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482592 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_003373719 |
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| Protein GI | 283782965 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACTCAA ATCCTGATTC TGACAATAGG AAAAATAATA TTCCTGAAGA GTTTGCACTT
CATATTCAAC GCTTTATTGC GCATATTGAT ATTGAGCGTG GTCTTTCTAA AAAAACAGTA
TCTGCATACG CTTCAGATTT GCAAGATTAC ACATGCTGGC TTTACAACGA ACGAAAAATA
AAAGATATTA CTACTATTTC TCAATTAGAT ATTGAATCAT ACATTCGAAC TTTGAATGAA
TTAGGGTTGG GAACTAGAAC AGTTGCGCGT CGACTTGCAA GTATTCACGA ATGGCACCGC
TTTATGCTTG CGCATGGCGA CATACAAGCT GACGTTTCAG CGCAAGTAAA AGCTCCAAAA
CAAGCAGACT ACTTGCCGGA TGTTTTAAGT ATTGAAGAAG TAAATAGAGT TATTGAAGCT
GCAGGAAATT TTGGAAGTTC CGATGCTATT TCGATTAGAG ATACTGCGCT TCTCGAATTT
TTATACGCTA CTGGAGCGCG AATTTCGGAA GCAGTTGGCG TAAAATTCGA AGATATTGAT
TTAAACGAAT CTGTTGTAAA ACTTACAGGT AAAGGCTCTA AGCAGCGTTT AGTCCCGATT
GGTGGGTGTG CTGTTCGTGC TCTTCGTAAC TATATGGAGA AATCTCGCCC AGAATTAGCG
TTAAAGGGCA AACGTGAATT GCACACAATT TTCTTAAATA AGAGAGGTAG TGCACTTTCT
CGCCAATCAG CATGGGAAAT AGTAACGCAA GCTGGCGAGC GCGCAAAACT TGACAAACCA
TTGCATCCGC ATACGTTGCG GCATTCTCTT GCTACGCATC TTATTGCAGG TGGTGCTGAT
GTGCGCACAG TTCAAGAGTT GCTTGGGCAT GCTTCAGTTA CAACAACTCA AATTTATACG
CATATTAGCC CTGACGCATT AGTTGAAGCT TACGTAATGA GTCATCCTCG AGCTAAATAA
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| Protein sequence | MHSNPDSDNR KNNIPEEFAL HIQRFIAHID IERGLSKKTV SAYASDLQDY TCWLYNERKI
KDITTISQLD IESYIRTLNE LGLGTRTVAR RLASIHEWHR FMLAHGDIQA DVSAQVKAPK
QADYLPDVLS IEEVNRVIEA AGNFGSSDAI SIRDTALLEF LYATGARISE AVGVKFEDID
LNESVVKLTG KGSKQRLVPI GGCAVRALRN YMEKSRPELA LKGKRELHTI FLNKRGSALS
RQSAWEIVTQ AGERAKLDKP LHPHTLRHSL ATHLIAGGAD VRTVQELLGH ASVTTTQIYT
HISPDALVEA YVMSHPRAK
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