Gene HMPREF0424_0474 details

Gene Information

• Locus tag: HMPREF0424_0474
• Symbol: asnB
• ID: 8709606
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 518296
• End bp: 520182
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 646482588
• Product: asparagine synthase (glutamine-hydrolyzing)
• Protein accession: YP_003373715
• Protein GI: 283782961
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0367] Asparagine synthase (glutamine-hydrolyzing)
• TIGRFAM ID: [TIGR01536] asparagine synthase (glutamine-hydrolyzing)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTGCGGAA TTGCAGGGTT CATTAATGAC ACCCCAATTA ACGTCAAAAG CCAAATTGTA 
AAAGATATGA CAGATGTGAT TGTGCATCGT GGTCCTGACG AGTATGGAAC TATGATTGAC 
GAACACGCAG CACTTGGTTT TCGTCGACTT AGCATTATAG ATCTTCACGG TGGATCCCAA 
CCTATGTACA ACGAGGATGG GAATCTTGCA GTTACTTTTA ATGGCGAGAT TTATAACTAC 
AAGCCACTTC GCGAAGAACT TATTAAAGCT GGTCACACTT TCCACACTGA TTGCGATACA 
GAAGTATTAG TGCACGGATA CGAAGAGTGG GGTAAAGGCT TACTTAATCG TTTACGCGGA 
ATGTTTGCAT TTGTTATTTG GAACAAGAGT ACTCAAGAAT TGTTTGGCGC TCGCGACCAT 
TTCGGTATTA AGCCTTTTTA TTATGCGCAA ATGAACGGTA CTTTTATGTA CGGATCCGAA 
ATTAAATCTT TACTGCGCCA TCCAGATTTT AAGAAGAAAC TTAACGAAAA TGCGCTTAAG 
CCGTTTATGA CATTCCAATA TCCTGCAATT AACGAAACTT TCTTCAAAGG CGTTTTTAAG 
CTGCGTGAAG GTAATTGCTT TACGTATAAG AATGGCGAAA TGAAGATTGA GCAATATTAC 
GATCCTAATT TCAAAGAAAC AAAGCAACGC TTGAATGAAT TAGTTGATTC TATCGATAAA 
ACAGTTTGTG ATTCTGTTCA AGCTCACCAA ATTGCGGATG TTGAAGTTGG TTCGTTCCTT 
TCTTCTGGAG TTGATTCAAG TTATGTTGCC GCTGTTGCGC GCCCTGAACA CACATATTCT 
ATTGGTTTTG CTGGTGGAAG ATACAATGAA TCCAAACAAG CAAGCGAATT GGCAAAAATT 
ATTGGCTTAA ACAATAAATC TGAAATTATT GACGCCGCTG ACGCATTCCG TTATTTCCCA 
CAAATTCAGT GGTATTTGGA CGAACCTGAT TCTAACTTCT CTTGCGTCCC ATTATTCTTC 
CTTGCAAAAT TAGCTTCGCA AGATTTACGC GTTGTGCTAA GCGGTGAGGG AGCAGATGAA 
TTATTTGCAG GATACATTGA TTATGGTGTT CATACGCGTT CTAAACTTAT TAAAGTTGTG 
ACTCGCATGC TTGCAAAGTT GCCAAAAAAG TTACGTTACG CGATTGGTCG AGCTGCAAAA 
GGAAAGCATT TCCACGGAGC ATGGCATTTG TACGCTAATT TGGCTCCAGC TGAGGAGCAT 
TTTATCGGTC AGTCAAAGGT TTTCAATGAG GAAGATGCTG TAAAACTTTT GAAACCTGAG 
TATCGCAAAG GTCCTAGCGT TCGCAGCATC GTCGATGCTA TTTACAGTAG AATTGCTGGT 
AAGGGACTTT CTGAAGTTAA GAAAAAGCAA TATCTTGATA TGCATCAATG GATGCCAGGA 
GATATTTTGC TTAAGGCAGA TAAAATGACT ATGGCTCATT CTTTGGAGCT TCGCGTGCCT 
TTGCTTGATC GCGTGCTCAT GGATGTTGCA GAAAAAGTTC CTACTAAATA CTTAATTACT 
GACGAAAATA CGAAGTTTGC TTTCCGACAA GCTGCGTCCC GTCATTTGCC AAAAGCTTGG 
TATGACAGAG AAAAGCTTGG TTTCCCTGTG CCAGTTAAGG ATTGGTTGCG CGAGGAACGT 
TTTTATAAGA TTGTGCGTAA GACGTTTGAA AGTGACGATG CTGCTAAATT CTTCGATAGA 
GATGCTTTAC TTCGTATGAT TGACGATAAT TATGCAAAGA AAAATGACGA TCGTCGTAAG 
ATTTGGACAG TTTACACATT CCTGACTTGG TATGATGTGT ACTTTAATCA TGATGGATTG 
AAACCTGAGC CAATGCAGTT AGCGTAG 

 

Protein sequence

MCGIAGFIND TPINVKSQIV KDMTDVIVHR GPDEYGTMID EHAALGFRRL SIIDLHGGSQ 
PMYNEDGNLA VTFNGEIYNY KPLREELIKA GHTFHTDCDT EVLVHGYEEW GKGLLNRLRG 
MFAFVIWNKS TQELFGARDH FGIKPFYYAQ MNGTFMYGSE IKSLLRHPDF KKKLNENALK 
PFMTFQYPAI NETFFKGVFK LREGNCFTYK NGEMKIEQYY DPNFKETKQR LNELVDSIDK 
TVCDSVQAHQ IADVEVGSFL SSGVDSSYVA AVARPEHTYS IGFAGGRYNE SKQASELAKI 
IGLNNKSEII DAADAFRYFP QIQWYLDEPD SNFSCVPLFF LAKLASQDLR VVLSGEGADE 
LFAGYIDYGV HTRSKLIKVV TRMLAKLPKK LRYAIGRAAK GKHFHGAWHL YANLAPAEEH 
FIGQSKVFNE EDAVKLLKPE YRKGPSVRSI VDAIYSRIAG KGLSEVKKKQ YLDMHQWMPG 
DILLKADKMT MAHSLELRVP LLDRVLMDVA EKVPTKYLIT DENTKFAFRQ AASRHLPKAW 
YDREKLGFPV PVKDWLREER FYKIVRKTFE SDDAAKFFDR DALLRMIDDN YAKKNDDRRK 
IWTVYTFLTW YDVYFNHDGL KPEPMQLA