| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0473 |
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| Symbol | |
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| ID | 8708837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 517199 |
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| End bp | 518017 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482587 |
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| Product | thiamine diphosphokinase |
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| Protein accession | YP_003373714 |
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| Protein GI | 283782960 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1564] Thiamine pyrophosphokinase |
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| TIGRFAM ID | [TIGR01378] thiamine pyrophosphokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGTT ATTATGTTGC TATGGAACCT TTGCAACGCT GCGTAGTATT AGCAGCAGGA
GATTATTACG ATCATACGCG TGAGCATGTG CCAGATCGCG CTTTAACAAT TGCAGCTGAT
GGAGGCTGGG ATCATGCATG TAAATTAGGT TTGCATGTGG ATGCGCTCAT CGGCGATTTT
GACTCTGTTA GATTAAAGCT CCCTACTGAT GCAGTTATTA CTAGATTGCC TGCAGAAAAA
GATGATCCGG ACTTACTTTC TGCGTTGAAA GTCGGTTGGG CTAAAGGCTC TCGAGAATTT
CATATTTTCG GAGGATTAGG TGGTCGAGTT GACCATACTA TTTCTAATAT TCAACTTATG
GTTCGTTTAG CGCGTCGCGG TGGAATTGGA TTCTTGTACG GCGACGGTCA AATTGTTACA
GCAATACATG ATGGATCTCT TGATTTTCCA GCATCATCTG GAAATGATTT GCGCATAGTT
TCCGTTTTTT CTCATACTCC AGTTTCTAAT GATGTAAATG AAGTTGGATT AAAGTATCAG
CTTAAACACG CAACCATGCA TGGAGATGCA GTACAAGGTT TAAGTAACGA ATTATTAAAT
GATACGCCGG CTCATATTGA CGTTCATGAA GGAACACTTA TTGTAACCTT CCCTATTAAC
GCTCCATTGC CACAGGTGAG CTGGTTTAAA AGACCAATTG GAGATTTAGG CGAAGTTGAT
GCTTCTATAT CGGAAGCATT AGCAGTTCCT CTTGAAAGCG AGACTACTCC AACATATTCG
ACTACTGCAG CTGCTGAAGC AATGACGTAT AACGAATAG
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| Protein sequence | MQRYYVAMEP LQRCVVLAAG DYYDHTREHV PDRALTIAAD GGWDHACKLG LHVDALIGDF
DSVRLKLPTD AVITRLPAEK DDPDLLSALK VGWAKGSREF HIFGGLGGRV DHTISNIQLM
VRLARRGGIG FLYGDGQIVT AIHDGSLDFP ASSGNDLRIV SVFSHTPVSN DVNEVGLKYQ
LKHATMHGDA VQGLSNELLN DTPAHIDVHE GTLIVTFPIN APLPQVSWFK RPIGDLGEVD
ASISEALAVP LESETTPTYS TTAAAEAMTY NE
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